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The map label for this gene is secF [H]

Identifier: 126208540

GI number: 126208540

Start: 1236707

End: 1237681

Strand: Direct

Name: secF [H]

Synonym: APL_1068

Alternate gene names: 126208540

Gene position: 1236707-1237681 (Clockwise)

Preceding gene: 162329625

Following gene: 126208541

Centisome position: 54.37

GC content: 41.64

Gene sequence:

>975_bases
ATGGCAACTATGCAAAAAGAAAAAGATGCGTCGGAAATCAAGCTGCCGTATAAGCTTATTCCATTTATGAAATATCGTTA
TGTCGGTTTCGTCTTTTCACTCATCGTTACCGCATTATGTATTTTCTCTATCGTTACCAAAGGTTTTAACTGGGGATTGG
ACTTTACCGGCGGTACGGTCATTGAAACGACCTTTTCCCAACCAGCCGATTTAAGCAAAGTACGCGGTTTATTGGAACAA
AACGGTTACGGTAATGCGTTAGTACAAACCACCGGTAGCCAAAAAGAACTGATGATTCGTTTACCGGCATCCGCCGGCGA
TATGTCGTTGGGTAATAAAATTATGGATCTTGTCCATCAAGATTTAGATCCTGCGGCAACGATTAAAAGTGTTGAGTTCG
TCGGACCGAATGTCGGGGAAGAGCTGACTCAAGGGGCGATTTGGGCAACACTTGCCACACTGGGGATGTTATTGCTTTAC
GTCGGTACGCGTTTTGAAATCCGTTTAGCAATCGGCGGTATTTTGGCATTATTCCATGACGTATTGGTAACTATCGGTAT
TTTCTCATTCTTACAGATTGAGATTGATCTGACTTTCGTGGCGGCAATTCTTTCCGTGGTAGGTTATTCATTAAATGACT
CTATCGTTGTATTCGACCGTGTACGTGAGAACTTTAGTAAAATCCGTCGTATAAATTCACAAGAAGTCATCGATATTTCA
TTAAGCCAAACGCTTTCAAGAACCTTAATGACTTCCGTTACGACCTTATTCGTTGTTTCGGCGTTATATTGGTTTGGCGG
TCCGACAATCCATAGCTTCTCGCTTGCCTTATTAATCGGTATCGGTTTCGGTACTTATTCATCGATTTATATTGCAATCG
GTGTGGCATTACAACTCGGTTTAAATCGTGAACATATGGTTAAACCGGTAGTGGAAAAAGAAGGTGCGGATCAACAAGCG
TTTATTGATCATTAA

Upstream 100 bases:

>100_bases
ATTTCGATGTTTACCGCAATTACCGGTACTCGTATGCTCGTAAACTGGGTGTACGGCGGCAATAAACGTGTGAAAAAACT
TTGGATTTAAGGTGGAATAA

Downstream 100 bases:

>100_bases
CAGATAGTTTTTTATCAAAATATCGTATATAATTCGCAAAATATATCAAAGGGGTGGAATTTTTCCGCCCCTTTGTCGTA
TCCGGATTTCGTAATGAAAT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MATMQKEKDASEIKLPYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVRGLLEQ
NGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDLDPAATIKSVEFVGPNVGEELTQGAIWATLATLGMLLLY
VGTRFEIRLAIGGILALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRINSQEVIDIS
LSQTLSRTLMTSVTTLFVVSALYWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVKPVVEKEGADQQA
FIDH

Sequences:

>Translated_324_residues
MATMQKEKDASEIKLPYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVRGLLEQ
NGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDLDPAATIKSVEFVGPNVGEELTQGAIWATLATLGMLLLY
VGTRFEIRLAIGGILALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRINSQEVIDIS
LSQTLSRTLMTSVTTLFVVSALYWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVKPVVEKEGADQQA
FIDH
>Mature_323_residues
ATMQKEKDASEIKLPYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVRGLLEQN
GYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDLDPAATIKSVEFVGPNVGEELTQGAIWATLATLGMLLLYV
GTRFEIRLAIGGILALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRINSQEVIDISL
SQTLSRTLMTSVTTLFVVSALYWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVKPVVEKEGADQQAF
IDH

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=324, Percent_Identity=47.8395061728395, Blast_Score=310, Evalue=1e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35521; Mature: 35390

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATMQKEKDASEIKLPYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTV
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
IETTFSQPADLSKVRGLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQ
EEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHH
DLDPAATIKSVEFVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHD
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHH
VLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRINSQEVIDIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEH
LSQTLSRTLMTSVTTLFVVSALYWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
LNREHMVKPVVEKEGADQQAFIDH
CCHHHHHCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ATMQKEKDASEIKLPYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTV
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
IETTFSQPADLSKVRGLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQ
EEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHH
DLDPAATIKSVEFVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHD
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHH
VLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRINSQEVIDIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEH
LSQTLSRTLMTSVTTLFVVSALYWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
LNREHMVKPVVEKEGADQQAFIDH
CCHHHHHCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]