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The map label for this gene is lppB [H]

Identifier: 126209389

GI number: 126209389

Start: 2165362

End: 2165937

Strand: Direct

Name: lppB [H]

Synonym: APL_1929

Alternate gene names: 126209389

Gene position: 2165362-2165937 (Clockwise)

Preceding gene: 126209388

Following gene: 126209390

Centisome position: 95.2

GC content: 44.62

Gene sequence:

>576_bases
ATGAAGAAATCATTTATTTTATTCCCATTAGCAGTTTCAGTTTCTTTAGCCTTATCGGGCTGTTCGTCTTCTTCGTCTTC
TTCGTCTGATGGGGCGGAAGTGGCGAATGTGAATTCAAACGGTATTTCATCGACAACCGCATTGCCGAGCTGGCAAGCGA
CGGATTCGATTCAATCGGTAGAAATGCCGGCGTCTATGGCATCGGCTCCGTCACGGACAATCGAGCAAAATACCGCTTAT
AATAATCAAACCGCTTATACGCAACCGGTTAATAGCGTACCGCAACAGCCTGTGGTTCAAACTCCGGTACAATCCGCACC
GAGCTATACAAGCGAAAGCGGTGCCGGTAGCAATATGATTGGTAATTGCCGAGTGGTAAGAGATGCGTTAGGTGCACCGG
TTTATGCGGAAATTACCAAAGGTTGTTATACCGATAGTAGTTATACGGTCGGAAAAAGCGATACAATGTATTTAATTTCG
TATCTTACCGGTCAAACGCCGGCACAAATTGCGGCATTAAATAATCTCAGTGTAGAGAGTAAATTACACGTAGGTCAAAT
ACTGCGTGTAAGATAA

Upstream 100 bases:

>100_bases
AAAAAATTCGTCGTTCTATCGAATTAATCGGTTGGGGAACGATTGTTGCGGCAGCCTTAGCTTATATCGCTTATCAATTA
TTTAAATAAAGGATATGACA

Downstream 100 bases:

>100_bases
CGGTAGGTTTATTTTGTTAGTATTAACGACAGTTGTGCTTTGCCGCTGTCGTTTTATTCGTTTTTAGATTTTAAAGGAAA
GTAATATGAAAAAGGCATTT

Product: lipoprotein

Products: NA

Alternate protein names: Fragment [H]

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKKSFILFPLAVSVSLALSGCSSSSSSSSDGAEVANVNSNGISSTTALPSWQATDSIQSVEMPASMASAPSRTIEQNTAY
NNQTAYTQPVNSVPQQPVVQTPVQSAPSYTSESGAGSNMIGNCRVVRDALGAPVYAEITKGCYTDSSYTVGKSDTMYLIS
YLTGQTPAQIAALNNLSVESKLHVGQILRVR

Sequences:

>Translated_191_residues
MKKSFILFPLAVSVSLALSGCSSSSSSSSDGAEVANVNSNGISSTTALPSWQATDSIQSVEMPASMASAPSRTIEQNTAY
NNQTAYTQPVNSVPQQPVVQTPVQSAPSYTSESGAGSNMIGNCRVVRDALGAPVYAEITKGCYTDSSYTVGKSDTMYLIS
YLTGQTPAQIAALNNLSVESKLHVGQILRVR
>Mature_191_residues
MKKSFILFPLAVSVSLALSGCSSSSSSSSDGAEVANVNSNGISSTTALPSWQATDSIQSVEMPASMASAPSRTIEQNTAY
NNQTAYTQPVNSVPQQPVVQTPVQSAPSYTSESGAGSNMIGNCRVVRDALGAPVYAEITKGCYTDSSYTVGKSDTMYLIS
YLTGQTPAQIAALNNLSVESKLHVGQILRVR

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 19969; Mature: 19969

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSFILFPLAVSVSLALSGCSSSSSSSSDGAEVANVNSNGISSTTALPSWQATDSIQSV
CCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHH
EMPASMASAPSRTIEQNTAYNNQTAYTQPVNSVPQQPVVQTPVQSAPSYTSESGAGSNMI
HCCHHHHCCCCHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
GNCRVVRDALGAPVYAEITKGCYTDSSYTVGKSDTMYLISYLTGQTPAQIAALNNLSVES
CCHHHHHHHHCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCCHHEEEECCCCCCC
KLHVGQILRVR
CCCCCEEEECC
>Mature Secondary Structure
MKKSFILFPLAVSVSLALSGCSSSSSSSSDGAEVANVNSNGISSTTALPSWQATDSIQSV
CCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHH
EMPASMASAPSRTIEQNTAYNNQTAYTQPVNSVPQQPVVQTPVQSAPSYTSESGAGSNMI
HCCHHHHCCCCHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
GNCRVVRDALGAPVYAEITKGCYTDSSYTVGKSDTMYLISYLTGQTPAQIAALNNLSVES
CCHHHHHHHHCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCCHHEEEECCCCCCC
KLHVGQILRVR
CCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8478068 [H]