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The map label for this gene is lppB [H]

Identifier: 126209390

GI number: 126209390

Start: 2166254

End: 2167492

Strand: Direct

Name: lppB [H]

Synonym: APL_1930

Alternate gene names: 126209390

Gene position: 2166254-2167492 (Clockwise)

Preceding gene: 126209389

Following gene: 126209391

Centisome position: 95.24

GC content: 47.62

Gene sequence:

>1239_bases
ATGAAGAAATCATTTTTTTTATTGCCGTTAGCCGCGGTAATTTTGACCGCTTGTAGTTCCAATCAACCCGCTCCCGTCGT
AAGTGCGGCGGATAGTACGGAATTAACGCCGGGCGTAATGCAGCCGGTAGCCGGCAGCGCGCCGACAACTTACGGCTGGC
AATCCGATATTCAGCCGGCATCTATGCCGACTACAATGGGATCGACATCGATTCCGACTCCGACCATTCCTCAACCGGTT
ATAAAAAATCCGGTCATTACCGAACAGCCGGCTCAGCCGCAAACGGCGACGAAAATCGTTAAAAAAACCAAAACGGTTGA
GAAAAAAGTAAATCAGAATTTTGAGATCCCTCGCGATGCGAACAATGCGCCGGTGTATAGTCAAATTCAAAAAGGTTTCT
ACGACGGTTCGACTTATACGGTGCGTAAAGGCGATACCATGTTCTTGATCGCTTATATTATCGGTAAAGACGTAAAAGAA
ATTGCCGCATTGAATAATATGAGCGAGCCGTATCAATTAACCGTCGGTCAAAAATTAAAAACCGGTAAATCCGCAACGGA
AACGGTAACGGTAGAAGAAAAAGTTACCGTACCTGTCGAACCGCAAATAACTTATCAACAGGGAGCGAACGGTACGACTT
ACGCTTCGGACGGTAATATTACCGGACCGGTAAAAGCAAGCACCGGTTCGGCTTCCGTACCTGCAACCAACAACGGTATT
CGCGCTTCGGTAGGTAATCCTGCAACGGCTTCATCTACTGCGACCACCGCAGTGGTTGCAAGTGCGGCGACAACACCGGC
GGTACGAGCTACGACAGCAACCGCACCTAATTATTCTTCTTCAAATAACGTGAGTGCGCCGGCTTCTAACTTTAAATGGC
AATGGCCGACGGCAGGTCGCGTAGTATCCGGTTTCTCTGCGGCGGAAGGCGGCAATAAAGGTATCGATATTGCCGGTAGC
AAAGGACAAGACGTAAAAGCGGCGGCGGCAGGTAAAGTGGTCTATGCCGGTAATGCTTTAGAAGGCTACGGTAACTTGAT
TATCATTAAACACAATGATGACTTCCTCAGTGCTTATGCGCATAATGACAGTATCAAAGTCGATGAACAGGATACGGTAA
ATGCCGGCGATACGATTGCGCGTATGGGAAGTACCGGTACGAACAGTAACAAACTTCACTTTGAAATTCGTTACAAAGGT
AAATCGGTTGATCCGACTCGCTATTTACCAAGAAAATAG

Upstream 100 bases:

>100_bases
GACAGGAAGCTACGGTTGGTCGTCAGACGTTGAGTCCGCACCGATGCCGGCTTCAATGACTAAATAATCGTTTTAGCATA
CGAAAGGATAAATTGAACAG

Downstream 100 bases:

>100_bases
TTGTAACGTTTAGTTAAAAGCTGACCGCTTGTGAGTATGATTTTTATCACAAGCGGTCTTTTTTCATCAGTTTTTGGAGA
ATATGGCTATGGTAAAGCGT

Product: Outer membrane antigenic lipoprotein B precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MKKSFFLLPLAAVILTACSSNQPAPVVSAADSTELTPGVMQPVAGSAPTTYGWQSDIQPASMPTTMGSTSIPTPTIPQPV
IKNPVITEQPAQPQTATKIVKKTKTVEKKVNQNFEIPRDANNAPVYSQIQKGFYDGSTYTVRKGDTMFLIAYIIGKDVKE
IAALNNMSEPYQLTVGQKLKTGKSATETVTVEEKVTVPVEPQITYQQGANGTTYASDGNITGPVKASTGSASVPATNNGI
RASVGNPATASSTATTAVVASAATTPAVRATTATAPNYSSSNNVSAPASNFKWQWPTAGRVVSGFSAAEGGNKGIDIAGS
KGQDVKAAAAGKVVYAGNALEGYGNLIIIKHNDDFLSAYAHNDSIKVDEQDTVNAGDTIARMGSTGTNSNKLHFEIRYKG
KSVDPTRYLPRK

Sequences:

>Translated_412_residues
MKKSFFLLPLAAVILTACSSNQPAPVVSAADSTELTPGVMQPVAGSAPTTYGWQSDIQPASMPTTMGSTSIPTPTIPQPV
IKNPVITEQPAQPQTATKIVKKTKTVEKKVNQNFEIPRDANNAPVYSQIQKGFYDGSTYTVRKGDTMFLIAYIIGKDVKE
IAALNNMSEPYQLTVGQKLKTGKSATETVTVEEKVTVPVEPQITYQQGANGTTYASDGNITGPVKASTGSASVPATNNGI
RASVGNPATASSTATTAVVASAATTPAVRATTATAPNYSSSNNVSAPASNFKWQWPTAGRVVSGFSAAEGGNKGIDIAGS
KGQDVKAAAAGKVVYAGNALEGYGNLIIIKHNDDFLSAYAHNDSIKVDEQDTVNAGDTIARMGSTGTNSNKLHFEIRYKG
KSVDPTRYLPRK
>Mature_412_residues
MKKSFFLLPLAAVILTACSSNQPAPVVSAADSTELTPGVMQPVAGSAPTTYGWQSDIQPASMPTTMGSTSIPTPTIPQPV
IKNPVITEQPAQPQTATKIVKKTKTVEKKVNQNFEIPRDANNAPVYSQIQKGFYDGSTYTVRKGDTMFLIAYIIGKDVKE
IAALNNMSEPYQLTVGQKLKTGKSATETVTVEEKVTVPVEPQITYQQGANGTTYASDGNITGPVKASTGSASVPATNNGI
RASVGNPATASSTATTAVVASAATTPAVRATTATAPNYSSSNNVSAPASNFKWQWPTAGRVVSGFSAAEGGNKGIDIAGS
KGQDVKAAAAGKVVYAGNALEGYGNLIIIKHNDDFLSAYAHNDSIKVDEQDTVNAGDTIARMGSTGTNSNKLHFEIRYKG
KSVDPTRYLPRK

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=72.5, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI87082174, Length=279, Percent_Identity=37.9928315412186, Blast_Score=178, Evalue=6e-46,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=36.3636363636364, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 43142; Mature: 43142

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSFFLLPLAAVILTACSSNQPAPVVSAADSTELTPGVMQPVAGSAPTTYGWQSDIQPA
CCCCEEHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
SMPTTMGSTSIPTPTIPQPVIKNPVITEQPAQPQTATKIVKKTKTVEKKVNQNFEIPRDA
CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
NNAPVYSQIQKGFYDGSTYTVRKGDTMFLIAYIIGKDVKEIAALNNMSEPYQLTVGQKLK
CCCCHHHHHHHCCCCCCEEEEECCCCEEEEEEHHCCCHHHHHHHCCCCCCEEEECCCCCC
TGKSATETVTVEEKVTVPVEPQITYQQGANGTTYASDGNITGPVKASTGSASVPATNNGI
CCCCCCEEEEECCEEEECCCCCEEHCCCCCCCEECCCCCCCCCEEECCCCCCCCCCCCCE
RASVGNPATASSTATTAVVASAATTPAVRATTATAPNYSSSNNVSAPASNFKWQWPTAGR
EEECCCCCCCCCCHHHHEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
VVSGFSAAEGGNKGIDIAGSKGQDVKAAAAGKVVYAGNALEGYGNLIIIKHNDDFLSAYA
EECCCHHCCCCCCCEEEECCCCCCEEHHHCCEEEEECCCCCCCCCEEEEEECCCEEEEEE
HNDSIKVDEQDTVNAGDTIARMGSTGTNSNKLHFEIRYKGKSVDPTRYLPRK
CCCCEEECCCCCCCCCCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MKKSFFLLPLAAVILTACSSNQPAPVVSAADSTELTPGVMQPVAGSAPTTYGWQSDIQPA
CCCCEEHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
SMPTTMGSTSIPTPTIPQPVIKNPVITEQPAQPQTATKIVKKTKTVEKKVNQNFEIPRDA
CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
NNAPVYSQIQKGFYDGSTYTVRKGDTMFLIAYIIGKDVKEIAALNNMSEPYQLTVGQKLK
CCCCHHHHHHHCCCCCCEEEEECCCCEEEEEEHHCCCHHHHHHHCCCCCCEEEECCCCCC
TGKSATETVTVEEKVTVPVEPQITYQQGANGTTYASDGNITGPVKASTGSASVPATNNGI
CCCCCCEEEEECCEEEECCCCCEEHCCCCCCCEECCCCCCCCCEEECCCCCCCCCCCCCE
RASVGNPATASSTATTAVVASAATTPAVRATTATAPNYSSSNNVSAPASNFKWQWPTAGR
EEECCCCCCCCCCHHHHEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
VVSGFSAAEGGNKGIDIAGSKGQDVKAAAAGKVVYAGNALEGYGNLIIIKHNDDFLSAYA
EECCCHHCCCCCCCEEEECCCCCCEEHHHCCEEEEECCCCCCCCCEEEEEECCCEEEEEE
HNDSIKVDEQDTVNAGDTIARMGSTGTNSNKLHFEIRYKGKSVDPTRYLPRK
CCCCEEECCCCCCCCCCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]