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The map label for this gene is dmsB [H]

Identifier: 126209139

GI number: 126209139

Start: 1902519

End: 1903136

Strand: Direct

Name: dmsB [H]

Synonym: APL_1675

Alternate gene names: 126209139

Gene position: 1902519-1903136 (Clockwise)

Preceding gene: 126209138

Following gene: 126209140

Centisome position: 83.65

GC content: 42.23

Gene sequence:

>618_bases
ATGGAACAATATGGTTTTTATTTCGATTCTGAACGTTGCACAGGTTGTAAAACTTGCGAATTAGCGTGCAAGGATTATAA
AGATTTAGGTACTGATGTGAATTTTCGCCGTATTTATGAATATGCCGGTGGGAATTGGGTACAAGATAATAATGGTTGTT
GGAATCAAGATGTCTTTGCTTACTATATGTCGATTTCGTGTAACCATTGTGATGATCCTGTGTGTGTAAAAGTGTGTCCG
ACCGGTGCGATGCACAAAAATGCGGACGGTTTTGTAATGGTAAATGAATATACCTGTATCGGCTGTCGTTATTGCAGTAT
GGCATGTCCTTACGATGCACCGCAATATAGTGCAAGCAAAGGACATATGACGAAATGTGACGGTTGTTATTCCCGTGTGA
AAGAGGGTCAAAAACCGATTTGTGTCGAATCTTGCCCGTTACGTGCATTAGATTTTGCACCGATAAAAGAGCTACGAGCG
AAATACGGTGAACAGGCATCGATTGCACCGTTACCGCCAGCGGATTTAACCAAACCGAATTTAGTGGTGAAAGCCAATAA
ACACGCACGTCCAAGTGGCGATACAACGGGGTTTTTAGCTAACCCAAGAGAGGTGTAA

Upstream 100 bases:

>100_bases
TTGTATTAATGTGCTTACTACCCAACGCCCATCTCCACTAGCGAAAGGCAATCCGCAACATTCTAACTTAGTGCAAATTG
AGAAATTATAGAGGTGAGCT

Downstream 100 bases:

>100_bases
GATGAATGCAGGATTACATGAATTACCGTTGGTTTTCTTTACGGTGTTAGCTCAAACGGCGGTCGGATTTTGGCTGATTT
TTACCTTTGTAATGTGCAAA

Product: anaerobic dimethyl sulfoxide reductase chain B

Products: NA

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MEQYGFYFDSERCTGCKTCELACKDYKDLGTDVNFRRIYEYAGGNWVQDNNGCWNQDVFAYYMSISCNHCDDPVCVKVCP
TGAMHKNADGFVMVNEYTCIGCRYCSMACPYDAPQYSASKGHMTKCDGCYSRVKEGQKPICVESCPLRALDFAPIKELRA
KYGEQASIAPLPPADLTKPNLVVKANKHARPSGDTTGFLANPREV

Sequences:

>Translated_205_residues
MEQYGFYFDSERCTGCKTCELACKDYKDLGTDVNFRRIYEYAGGNWVQDNNGCWNQDVFAYYMSISCNHCDDPVCVKVCP
TGAMHKNADGFVMVNEYTCIGCRYCSMACPYDAPQYSASKGHMTKCDGCYSRVKEGQKPICVESCPLRALDFAPIKELRA
KYGEQASIAPLPPADLTKPNLVVKANKHARPSGDTTGFLANPREV
>Mature_205_residues
MEQYGFYFDSERCTGCKTCELACKDYKDLGTDVNFRRIYEYAGGNWVQDNNGCWNQDVFAYYMSISCNHCDDPVCVKVCP
TGAMHKNADGFVMVNEYTCIGCRYCSMACPYDAPQYSASKGHMTKCDGCYSRVKEGQKPICVESCPLRALDFAPIKELRA
KYGEQASIAPLPPADLTKPNLVVKANKHARPSGDTTGFLANPREV

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787872, Length=203, Percent_Identity=74.384236453202, Blast_Score=332, Evalue=1e-92,
Organism=Escherichia coli, GI1787122, Length=203, Percent_Identity=73.8916256157635, Blast_Score=329, Evalue=1e-91,
Organism=Escherichia coli, GI1787749, Length=159, Percent_Identity=32.0754716981132, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1790326, Length=174, Percent_Identity=31.6091954022989, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1789370, Length=184, Percent_Identity=32.6086956521739, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI226510944, Length=155, Percent_Identity=36.1290322580645, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI2367345, Length=184, Percent_Identity=32.6086956521739, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI2367245, Length=165, Percent_Identity=29.6969696969697, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1787740, Length=127, Percent_Identity=31.496062992126, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1787478, Length=91, Percent_Identity=37.3626373626374, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87082179, Length=155, Percent_Identity=32.9032258064516, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789067, Length=188, Percent_Identity=29.2553191489362, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788811, Length=156, Percent_Identity=30.1282051282051, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082180, Length=201, Percent_Identity=26.865671641791, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787963, Length=151, Percent_Identity=29.8013245033113, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789079, Length=112, Percent_Identity=32.1428571428571, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 22851; Mature: 22851

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
11.2 %Cys+Met (Translated Protein)
8.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
11.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQYGFYFDSERCTGCKTCELACKDYKDLGTDVNFRRIYEYAGGNWVQDNNGCWNQDVFA
CCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHEECCCCCEEECCCCCCCCCEEE
YYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEYTCIGCRYCSMACPYDAPQYSASK
EEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCEEEEEEEEECCCCCCCCCCCCCCC
GHMTKCDGCYSRVKEGQKPICVESCPLRALDFAPIKELRAKYGEQASIAPLPPADLTKPN
CCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
LVVKANKHARPSGDTTGFLANPREV
EEEEECCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MEQYGFYFDSERCTGCKTCELACKDYKDLGTDVNFRRIYEYAGGNWVQDNNGCWNQDVFA
CCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHEECCCCCEEECCCCCCCCCEEE
YYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEYTCIGCRYCSMACPYDAPQYSASK
EEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCEEEEEEEEECCCCCCCCCCCCCCC
GHMTKCDGCYSRVKEGQKPICVESCPLRALDFAPIKELRAKYGEQASIAPLPPADLTKPN
CCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
LVVKANKHARPSGDTTGFLANPREV
EEEEECCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 8635740 [H]