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The map label for this gene is rfbA [H]

Identifier: 126208927

GI number: 126208927

Start: 1676054

End: 1676845

Strand: Direct

Name: rfbA [H]

Synonym: APL_1463

Alternate gene names: 126208927

Gene position: 1676054-1676845 (Clockwise)

Preceding gene: 126208925

Following gene: 126208928

Centisome position: 73.69

GC content: 30.56

Gene sequence:

>792_bases
ATGATAAAGGCTATTGCTGGTAAGATTGAGCGTTTTTTCGCCTTTGATGAGCTACTTAAGCAGCTTGTTGTTCGTGATGT
AAAATTAAAATATAGACGTAGCTATTTAGGATACTTATGGAGCATCTTAAATCCGTTAATGCTGATGATGGTTCAGGTTA
TTGTTTTTTCAAATTTATTTAGATTTGATACTCCGAACTATCCGTTATATTTAATATCTGGGCAAATTATCTTTAATTTT
ATGGTAGAAGCTACAAATATGTCTGTTTGGTCAATAACAGGGAATGCTTCATTATTAAAGAAAACTTATGTTCCAAAATA
TATTTTTACAGTATCAAAAGTCGGTAGTTCATTAGTAAATCTCATATTCTCATTAGGTGCATTACTATTAGTAATGATTA
TTACTGATGCGGAATTTACTTTGAACTTATTATTTTTCCCTGTCATTATTTTGCAAGTTTTAGTATTTAGCTTAGGATTA
GGGCTTTTCCTAGCTGCTGCAACAGTATTCTTCCGTGATATTCAGTATTTGTGGGGTGTTTTTGTCTCTATGTGGATGTA
TTTAACACCGCTATTTTACCCAATAAATATTATTCCTGAGGAATATCAGAATTTATATAAATCAGCTAATCCAATGTATT
GGTATATTGAGCAATTTAGAGATATTGTATTATATGCAAAATTTCCTCAGTTTGACTCAATAATAATGGGAACTGGGCTC
GCATTTTTAGTATTAATTTTGGGGGCCGGGTATTTTAATAAGAAACAAGACGAATTTATTTTATATATCTAA

Upstream 100 bases:

>100_bases
CTTCCGGAAATACTGGTATCATTCGCAAAGATTTAACTCGGAATATCAACTATAACCTACTGATTAAGAAGGTTATTTAA
TTTAGTAAAGGTAAATATTA

Downstream 100 bases:

>100_bases
TGAACACAGAAGTCGTAATTAAAGTTACAGATGCAACCGTGCGTTTTAATAAAGCAACGGAAAGCTATAATGGCTTAAAG
GAATATGTCATTAAAATGCT

Product: putative ABC-transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MIKAIAGKIERFFAFDELLKQLVVRDVKLKYRRSYLGYLWSILNPLMLMMVQVIVFSNLFRFDTPNYPLYLISGQIIFNF
MVEATNMSVWSITGNASLLKKTYVPKYIFTVSKVGSSLVNLIFSLGALLLVMIITDAEFTLNLLFFPVIILQVLVFSLGL
GLFLAAATVFFRDIQYLWGVFVSMWMYLTPLFYPINIIPEEYQNLYKSANPMYWYIEQFRDIVLYAKFPQFDSIIMGTGL
AFLVLILGAGYFNKKQDEFILYI

Sequences:

>Translated_263_residues
MIKAIAGKIERFFAFDELLKQLVVRDVKLKYRRSYLGYLWSILNPLMLMMVQVIVFSNLFRFDTPNYPLYLISGQIIFNF
MVEATNMSVWSITGNASLLKKTYVPKYIFTVSKVGSSLVNLIFSLGALLLVMIITDAEFTLNLLFFPVIILQVLVFSLGL
GLFLAAATVFFRDIQYLWGVFVSMWMYLTPLFYPINIIPEEYQNLYKSANPMYWYIEQFRDIVLYAKFPQFDSIIMGTGL
AFLVLILGAGYFNKKQDEFILYI
>Mature_263_residues
MIKAIAGKIERFFAFDELLKQLVVRDVKLKYRRSYLGYLWSILNPLMLMMVQVIVFSNLFRFDTPNYPLYLISGQIIFNF
MVEATNMSVWSITGNASLLKKTYVPKYIFTVSKVGSSLVNLIFSLGALLLVMIITDAEFTLNLLFFPVIILQVLVFSLGL
GLFLAAATVFFRDIQYLWGVFVSMWMYLTPLFYPINIIPEEYQNLYKSANPMYWYIEQFRDIVLYAKFPQFDSIIMGTGL
AFLVLILGAGYFNKKQDEFILYI

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30544; Mature: 30544

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCCCCCCCCCCEEEEC
>Mature Secondary Structure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HHHHHHHCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]