BacMap

Definition	Actinobacillus pleuropneumoniae serovar 5b str. L20 chromosome, complete genome.
Accession	NC_009053
Length	2,274,482

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The map label for this gene is wzm [H]

Identifier: 126208928

GI number: 126208928

Start: 1676845

End: 1677576

Strand: Direct

Name: wzm [H]

Synonym: APL_1464

Alternate gene names: 126208928

Gene position: 1676845-1677576 (Clockwise)

Preceding gene: 126208927

Following gene: 126208929

Centisome position: 73.72

GC content: 35.38

Gene sequence:

>732_bases
ATGAACACAGAAGTCGTAATTAAAGTTACAGATGCAACCGTGCGTTTTAATAAAGCAACGGAAAGCTATAATGGCTTAAA
GGAATATGTCATTAAAATGCTAAAAGGTGAACTAATGTTCCAAGAGTTTTTAGCGTTACAAGATGTAAATCTTGAAGTTA
AACGTGGTGAATCTTGGGGACTGATTGGTACCAATGGCTCCGGTAAATCGACTTTACTCAAACTAATTTGTGGTATTTTG
AAACCTTATAAAGGTTCTGTAGAAGTAAATGGTAATATTGCTCCATTGATTGAGCTTGGCGCTGGATTTGATGGCGAATT
AACCGCAAGAGAAAATATTTATTTAAACGGTGCTTTATTAGGTCATAAAAAAGCCTTTATGGAACAGCATTTCGATGAAA
TTATTGAGTTTGCAGAGTTACAAGATTTCATTGACGTACCGCTTAAAAATTTCTCATCCGGTATGGCAGCACGACTTGGC
TTTGCTGTTGCAACTATAGTAAAACCAGAAATTCTGATTATTGATGAAGTGTTAGCCGTAGGCGATGCAGCATTCCAAGA
AAAATGTAAGCAGAGAATGACTAAAATGTTAGAAGGGGGGACAACATTACTATTTGTTTCACATTCTATCGATCAGGTAA
AAGAGCTTTGTCAGAATGTAATTTGGATTGATAAAGGCATAGTAAAAGCTTGTGGAAAAGCAGAAGATGTTATTCCTCTA
TATGATTTATAA

Upstream 100 bases:

>100_bases
TTGACTCAATAATAATGGGAACTGGGCTCGCATTTTTAGTATTAATTTTGGGGGCCGGGTATTTTAATAAGAAACAAGAC
GAATTTATTTTATATATCTA

Downstream 100 bases:

>100_bases
GAAATGAGTGATGAATGGTATGGTTTTAATTACTAAAGAGCAAAGTAATTTTATTAAAGGAATTGCAATTTGCTTAATGC
TATTCCATCATCTCTTTACA

Product: ABC transporter integral membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNTEVVIKVTDATVRFNKATESYNGLKEYVIKMLKGELMFQEFLALQDVNLEVKRGESWGLIGTNGSGKSTLLKLICGIL
KPYKGSVEVNGNIAPLIELGAGFDGELTARENIYLNGALLGHKKAFMEQHFDEIIEFAELQDFIDVPLKNFSSGMAARLG
FAVATIVKPEILIIDEVLAVGDAAFQEKCKQRMTKMLEGGTTLLFVSHSIDQVKELCQNVIWIDKGIVKACGKAEDVIPL
YDL

Sequences:

>Translated_243_residues
MNTEVVIKVTDATVRFNKATESYNGLKEYVIKMLKGELMFQEFLALQDVNLEVKRGESWGLIGTNGSGKSTLLKLICGIL
KPYKGSVEVNGNIAPLIELGAGFDGELTARENIYLNGALLGHKKAFMEQHFDEIIEFAELQDFIDVPLKNFSSGMAARLG
FAVATIVKPEILIIDEVLAVGDAAFQEKCKQRMTKMLEGGTTLLFVSHSIDQVKELCQNVIWIDKGIVKACGKAEDVIPL
YDL
>Mature_243_residues
MNTEVVIKVTDATVRFNKATESYNGLKEYVIKMLKGELMFQEFLALQDVNLEVKRGESWGLIGTNGSGKSTLLKLICGIL
KPYKGSVEVNGNIAPLIELGAGFDGELTARENIYLNGALLGHKKAFMEQHFDEIIEFAELQDFIDVPLKNFSSGMAARLG
FAVATIVKPEILIIDEVLAVGDAAFQEKCKQRMTKMLEGGTTLLFVSHSIDQVKELCQNVIWIDKGIVKACGKAEDVIPL
YDL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=230, Percent_Identity=25.6521739130435, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI27436953, Length=200, Percent_Identity=25.5, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI153792144, Length=210, Percent_Identity=27.1428571428571, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI27477115, Length=204, Percent_Identity=28.4313725490196, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI27881501, Length=213, Percent_Identity=21.1267605633803, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI30795238, Length=213, Percent_Identity=21.1267605633803, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI6005701, Length=202, Percent_Identity=26.2376237623762, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI47078218, Length=206, Percent_Identity=26.2135922330097, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI45446740, Length=206, Percent_Identity=26.2135922330097, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI150417984, Length=199, Percent_Identity=26.1306532663317, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI89111135, Length=192, Percent_Identity=28.6458333333333, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27262624, Length=206, Percent_Identity=24.2718446601942, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27262626, Length=206, Percent_Identity=24.2718446601942, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI105990541, Length=197, Percent_Identity=25.8883248730964, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI116734710, Length=201, Percent_Identity=23.8805970149254, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI48994943, Length=212, Percent_Identity=27.8301886792453, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1790467, Length=206, Percent_Identity=28.1553398058252, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87081782, Length=261, Percent_Identity=25.6704980842912, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI87081709, Length=204, Percent_Identity=25, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786398, Length=203, Percent_Identity=29.064039408867, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788450, Length=202, Percent_Identity=27.7227722772277, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87081791, Length=204, Percent_Identity=23.5294117647059, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48995001, Length=205, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789032, Length=218, Percent_Identity=25.2293577981651, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788761, Length=207, Percent_Identity=23.6714975845411, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788165, Length=213, Percent_Identity=26.7605633802817, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786975, Length=220, Percent_Identity=25.4545454545455, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786563, Length=204, Percent_Identity=25.4901960784314, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787029, Length=208, Percent_Identity=27.4038461538462, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788210, Length=210, Percent_Identity=26.1904761904762, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789873, Length=232, Percent_Identity=25.4310344827586, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=25.8928571428571, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=205, Percent_Identity=24.390243902439, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17510237, Length=209, Percent_Identity=24.4019138755981, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=213, Percent_Identity=24.4131455399061, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=213, Percent_Identity=24.4131455399061, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=213, Percent_Identity=24.4131455399061, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=213, Percent_Identity=23.0046948356808, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=217, Percent_Identity=24.8847926267281, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17569081, Length=207, Percent_Identity=23.6714975845411, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71992066, Length=234, Percent_Identity=26.0683760683761, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71992070, Length=234, Percent_Identity=26.0683760683761, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI86564969, Length=234, Percent_Identity=26.0683760683761, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25146765, Length=234, Percent_Identity=26.0683760683761, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=212, Percent_Identity=25, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321720, Length=194, Percent_Identity=25.2577319587629, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221500365, Length=186, Percent_Identity=30.1075268817204, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI116007184, Length=186, Percent_Identity=30.1075268817204, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24643674, Length=209, Percent_Identity=24.8803827751196, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45550390, Length=205, Percent_Identity=28.2926829268293, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221512771, Length=228, Percent_Identity=25, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582014, Length=212, Percent_Identity=29.2452830188679, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582012, Length=212, Percent_Identity=29.2452830188679, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28573573, Length=213, Percent_Identity=25.8215962441315, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28573571, Length=209, Percent_Identity=25.3588516746411, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85725262, Length=185, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24648279, Length=199, Percent_Identity=27.1356783919598, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI161078426, Length=199, Percent_Identity=27.1356783919598, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26792; Mature: 26792

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEVVIKVTDATVRFNKATESYNGLKEYVIKMLKGELMFQEFLALQDVNLEVKRGESWG
CCCEEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
LIGTNGSGKSTLLKLICGILKPYKGSVEVNGNIAPLIELGAGFDGELTARENIYLNGALL
EEECCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEEEECCCCCCCEEECCEEEEEEEEE
GHKKAFMEQHFDEIIEFAELQDFIDVPLKNFSSGMAARLGFAVATIVKPEILIIDEVLAV
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCEEHHHHHHH
GDAAFQEKCKQRMTKMLEGGTTLLFVSHSIDQVKELCQNVIWIDKGIVKACGKAEDVIPL
CCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
YDL
CCC
>Mature Secondary Structure
MNTEVVIKVTDATVRFNKATESYNGLKEYVIKMLKGELMFQEFLALQDVNLEVKRGESWG
CCCEEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
LIGTNGSGKSTLLKLICGILKPYKGSVEVNGNIAPLIELGAGFDGELTARENIYLNGALL
EEECCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEEEECCCCCCCEEECCEEEEEEEEE
GHKKAFMEQHFDEIIEFAELQDFIDVPLKNFSSGMAARLGFAVATIVKPEILIIDEVLAV
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCEEHHHHHHH
GDAAFQEKCKQRMTKMLEGGTTLLFVSHSIDQVKELCQNVIWIDKGIVKACGKAEDVIPL
CCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
YDL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]