| Definition | Actinobacillus pleuropneumoniae serovar 5b str. L20 chromosome, complete genome. |
|---|---|
| Accession | NC_009053 |
| Length | 2,274,482 |
Click here to switch to the map view.
The map label for this gene is 126208854
Identifier: 126208854
GI number: 126208854
Start: 1590464
End: 1591978
Strand: Direct
Name: 126208854
Synonym: APL_1390
Alternate gene names: NA
Gene position: 1590464-1591978 (Clockwise)
Preceding gene: 126208853
Following gene: 126208855
Centisome position: 69.93
GC content: 44.03
Gene sequence:
>1515_bases ATGTCTTCCAACACTACATCTACCGTAAAACGCGCTACATTTTCCGGTCGAAACGCCTTTATCATTGCCGCAATCGGATC TGCGGTCGGCTTAGGTAATATTTGGCGATTCCCCTACACAACTTATGAAAACGGCGGCGGTGCATTTATTATTCCTTATA TCGTTGCGCTTTTAACCGCCGGTATTCCGTTATTATTTTTAGATTTTGCAATTGGGCATCGTCACCGTGCGGCGGCTCCG CTTTCTTTCCGCCGCTTAAATCAACATTTTGAAGTTTTCGGCTGGTGGCAAGTTTTAGTCAATGTCATTATCGGCATTTA TTATGCCGTCGTACTCGGCTGGGCAGCCGTTTATACCTACTTCTCTCTGACGAAAGCTTGGGGGGATAAACCGGTTGATT TCTTTGTCGGAGAATTTCTTAAAATGGGGGATATTGCTAACGGTATCAGCTTTGATTTTGTCGGTATGGTTGTCGGTCCG CTTATCGCCGTATGGATTATCGCATTAATCGTATTGGCATTAGGAGTAGAAAAAGGGATTGCGAAAACATCAAGTATTTT AATGCCGGTTTTAGTCGTGATGTTTATTATCTTGGTGATTTCGTCGCTATTCTTACCGGGAGCGACCAAAGGTTTAGATG CGCTATTTACTCCGAATTGGGAAAAATTGGCGGATCCGAGCGTATGGATTGCCGCATACGGGCAGATCTTCTTCTCGCTC TCTATTTGTTTCGGAATTATGATCACTTATTCGTCTTACTTGAAAAAGGATTCCGATCTTACCGGCACCGGTATGGTGGT AGGGTTTGCCAACTCCAGTTTCGAGGTATTGGCAGGAATCGGCGTATTCGCCGCTTTAGGCTTTATGGCGTCCGCATCCG GTCAAGAAGTCAGTGAAGTCGCAAAAGGCGGTATCGGCTTGGCCTTCTTCGCCTTCCCGACTATCATCAACGAAGCACCG ATGGGAACCTTACTCGGCGTATTATTCTTCGGTTCATTAACTTTTGCCGCTTTAACCTCATTTATCTCGGTAATTGAAGT GATTATTGCAGCGGTTCAAGATAAATTAAAATTAGGGCGTATTGCTTCAACCTTTACGGTCGGTTTACCGATGATGTTGG TGTCCGTTATCTTATTCGGTACCACAACGGGGTTACCGATGTTGGATGTAATGGATAAATTTGTGAACAACTTCGGGATC GTAGCGGTTGCATTCGTTTCGTTAGTGGCAATTATTGCCAAAGGTAAACTAAGTACGCTCGGACATCATATTAATAAAAC CTCTTCGCTCAAAGTCGGCACACTATGGCGTTTATGCGTCATTATCACTACCGGTGTCTTGGCATTTATGTTATTCAGCG AAATTATTAAAGTCGTTCATGAGGGCTATGAAGGCTATCCGAGCTGGTTTATTAATATTTTCGGCTGGGGAATGGCAGTC AGCTTAATCTTAGTCGCCTTCTTACTCTCTCGGTTGAAATGGCAGAATGAAACCGAATTTAAAGTAGAACAATAG
Upstream 100 bases:
>100_bases GCATATTCACACCGTATTAACCTATTCTTGATGACATATTTTCATTGCGAATAACTCTTACAAATTTAGATAAAATAAAA TTATATTTGAGGTATATCTC
Downstream 100 bases:
>100_bases GAGAAAGCAAATGAGTACTTCAGCAGTTATTATGATGTGTGTTGCGTTAATCATTATCTGGGGCGGATTAGCCCTTGCCG TAAAACGATTACCGAAAGAA
Product: sodium-dependent transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 504; Mature: 503
Protein sequence:
>504_residues MSSNTTSTVKRATFSGRNAFIIAAIGSAVGLGNIWRFPYTTYENGGGAFIIPYIVALLTAGIPLLFLDFAIGHRHRAAAP LSFRRLNQHFEVFGWWQVLVNVIIGIYYAVVLGWAAVYTYFSLTKAWGDKPVDFFVGEFLKMGDIANGISFDFVGMVVGP LIAVWIIALIVLALGVEKGIAKTSSILMPVLVVMFIILVISSLFLPGATKGLDALFTPNWEKLADPSVWIAAYGQIFFSL SICFGIMITYSSYLKKDSDLTGTGMVVGFANSSFEVLAGIGVFAALGFMASASGQEVSEVAKGGIGLAFFAFPTIINEAP MGTLLGVLFFGSLTFAALTSFISVIEVIIAAVQDKLKLGRIASTFTVGLPMMLVSVILFGTTTGLPMLDVMDKFVNNFGI VAVAFVSLVAIIAKGKLSTLGHHINKTSSLKVGTLWRLCVIITTGVLAFMLFSEIIKVVHEGYEGYPSWFINIFGWGMAV SLILVAFLLSRLKWQNETEFKVEQ
Sequences:
>Translated_504_residues MSSNTTSTVKRATFSGRNAFIIAAIGSAVGLGNIWRFPYTTYENGGGAFIIPYIVALLTAGIPLLFLDFAIGHRHRAAAP LSFRRLNQHFEVFGWWQVLVNVIIGIYYAVVLGWAAVYTYFSLTKAWGDKPVDFFVGEFLKMGDIANGISFDFVGMVVGP LIAVWIIALIVLALGVEKGIAKTSSILMPVLVVMFIILVISSLFLPGATKGLDALFTPNWEKLADPSVWIAAYGQIFFSL SICFGIMITYSSYLKKDSDLTGTGMVVGFANSSFEVLAGIGVFAALGFMASASGQEVSEVAKGGIGLAFFAFPTIINEAP MGTLLGVLFFGSLTFAALTSFISVIEVIIAAVQDKLKLGRIASTFTVGLPMMLVSVILFGTTTGLPMLDVMDKFVNNFGI VAVAFVSLVAIIAKGKLSTLGHHINKTSSLKVGTLWRLCVIITTGVLAFMLFSEIIKVVHEGYEGYPSWFINIFGWGMAV SLILVAFLLSRLKWQNETEFKVEQ >Mature_503_residues SSNTTSTVKRATFSGRNAFIIAAIGSAVGLGNIWRFPYTTYENGGGAFIIPYIVALLTAGIPLLFLDFAIGHRHRAAAPL SFRRLNQHFEVFGWWQVLVNVIIGIYYAVVLGWAAVYTYFSLTKAWGDKPVDFFVGEFLKMGDIANGISFDFVGMVVGPL IAVWIIALIVLALGVEKGIAKTSSILMPVLVVMFIILVISSLFLPGATKGLDALFTPNWEKLADPSVWIAAYGQIFFSLS ICFGIMITYSSYLKKDSDLTGTGMVVGFANSSFEVLAGIGVFAALGFMASASGQEVSEVAKGGIGLAFFAFPTIINEAPM GTLLGVLFFGSLTFAALTSFISVIEVIIAAVQDKLKLGRIASTFTVGLPMMLVSVILFGTTTGLPMLDVMDKFVNNFGIV AVAFVSLVAIIAKGKLSTLGHHINKTSSLKVGTLWRLCVIITTGVLAFMLFSEIIKVVHEGYEGYPSWFINIFGWGMAVS LILVAFLLSRLKWQNETEFKVEQ
Specific function: Putative sodium-dependent transporter [H]
COG id: COG0733
COG function: function code R; Na+-dependent transporters of the SNF family
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]
Homologues:
Organism=Homo sapiens, GI21361581, Length=382, Percent_Identity=31.151832460733, Blast_Score=197, Evalue=1e-50, Organism=Homo sapiens, GI92859670, Length=553, Percent_Identity=27.6672694394213, Blast_Score=195, Evalue=9e-50, Organism=Homo sapiens, GI289191351, Length=513, Percent_Identity=27.6803118908382, Blast_Score=191, Evalue=1e-48, Organism=Homo sapiens, GI4557046, Length=513, Percent_Identity=27.6803118908382, Blast_Score=191, Evalue=1e-48, Organism=Homo sapiens, GI289191377, Length=513, Percent_Identity=27.6803118908382, Blast_Score=191, Evalue=2e-48, Organism=Homo sapiens, GI6005715, Length=552, Percent_Identity=28.9855072463768, Blast_Score=190, Evalue=3e-48, Organism=Homo sapiens, GI7657587, Length=535, Percent_Identity=28.0373831775701, Blast_Score=188, Evalue=1e-47, Organism=Homo sapiens, GI188528618, Length=511, Percent_Identity=28.7671232876712, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI134304856, Length=507, Percent_Identity=28.0078895463511, Blast_Score=179, Evalue=6e-45, Organism=Homo sapiens, GI171184408, Length=527, Percent_Identity=28.4629981024668, Blast_Score=179, Evalue=8e-45, Organism=Homo sapiens, GI171184406, Length=527, Percent_Identity=28.4629981024668, Blast_Score=179, Evalue=8e-45, Organism=Homo sapiens, GI171184404, Length=527, Percent_Identity=28.4629981024668, Blast_Score=179, Evalue=8e-45, Organism=Homo sapiens, GI4507041, Length=515, Percent_Identity=26.7961165048544, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI4507043, Length=512, Percent_Identity=26.3671875, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI67782317, Length=556, Percent_Identity=27.3381294964029, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI67782313, Length=556, Percent_Identity=27.3381294964029, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI67782315, Length=556, Percent_Identity=27.3381294964029, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI197276623, Length=346, Percent_Identity=30.0578034682081, Blast_Score=169, Evalue=5e-42, Organism=Homo sapiens, GI54607094, Length=346, Percent_Identity=30.0578034682081, Blast_Score=169, Evalue=5e-42, Organism=Homo sapiens, GI194018524, Length=560, Percent_Identity=26.25, Blast_Score=166, Evalue=4e-41, Organism=Homo sapiens, GI51468073, Length=547, Percent_Identity=25.2285191956124, Blast_Score=158, Evalue=1e-38, Organism=Homo sapiens, GI58219014, Length=313, Percent_Identity=32.2683706070287, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI5032097, Length=353, Percent_Identity=30.8781869688385, Blast_Score=156, Evalue=5e-38, Organism=Homo sapiens, GI218563756, Length=353, Percent_Identity=30.8781869688385, Blast_Score=147, Evalue=3e-35, Organism=Homo sapiens, GI33354281, Length=311, Percent_Identity=29.5819935691318, Blast_Score=142, Evalue=6e-34, Organism=Homo sapiens, GI11181770, Length=302, Percent_Identity=31.4569536423841, Blast_Score=141, Evalue=1e-33, Organism=Homo sapiens, GI289191353, Length=426, Percent_Identity=25.3521126760563, Blast_Score=122, Evalue=6e-28, Organism=Homo sapiens, GI12408638, Length=284, Percent_Identity=29.2253521126761, Blast_Score=119, Evalue=9e-27, Organism=Homo sapiens, GI300360519, Length=228, Percent_Identity=31.5789473684211, Blast_Score=114, Evalue=3e-25, Organism=Homo sapiens, GI21361693, Length=125, Percent_Identity=33.6, Blast_Score=93, Evalue=5e-19, Organism=Homo sapiens, GI197276625, Length=117, Percent_Identity=36.7521367521368, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI226437581, Length=260, Percent_Identity=26.9230769230769, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI218563758, Length=348, Percent_Identity=27.2988505747126, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI55749589, Length=319, Percent_Identity=24.1379310344828, Blast_Score=75, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17555248, Length=508, Percent_Identity=26.9685039370079, Blast_Score=179, Evalue=2e-45, Organism=Caenorhabditis elegans, GI133952791, Length=561, Percent_Identity=27.4509803921569, Blast_Score=175, Evalue=5e-44, Organism=Caenorhabditis elegans, GI17554804, Length=415, Percent_Identity=32.7710843373494, Blast_Score=172, Evalue=3e-43, Organism=Caenorhabditis elegans, GI25146584, Length=540, Percent_Identity=24.6296296296296, Blast_Score=162, Evalue=3e-40, Organism=Caenorhabditis elegans, GI71995588, Length=544, Percent_Identity=23.8970588235294, Blast_Score=160, Evalue=2e-39, Organism=Caenorhabditis elegans, GI17569475, Length=401, Percent_Identity=27.431421446384, Blast_Score=128, Evalue=6e-30, Organism=Caenorhabditis elegans, GI71998244, Length=394, Percent_Identity=28.6802030456853, Blast_Score=128, Evalue=7e-30, Organism=Caenorhabditis elegans, GI17542050, Length=108, Percent_Identity=42.5925925925926, Blast_Score=108, Evalue=8e-24, Organism=Caenorhabditis elegans, GI115534083, Length=459, Percent_Identity=23.0936819172113, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17535731, Length=109, Percent_Identity=40.3669724770642, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI212642127, Length=112, Percent_Identity=35.7142857142857, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24762620, Length=525, Percent_Identity=28.3809523809524, Blast_Score=196, Evalue=2e-50, Organism=Drosophila melanogaster, GI24654186, Length=560, Percent_Identity=28.3928571428571, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI281364136, Length=558, Percent_Identity=28.673835125448, Blast_Score=191, Evalue=9e-49, Organism=Drosophila melanogaster, GI17136952, Length=534, Percent_Identity=28.6516853932584, Blast_Score=190, Evalue=2e-48, Organism=Drosophila melanogaster, GI24639514, Length=503, Percent_Identity=27.037773359841, Blast_Score=187, Evalue=2e-47, Organism=Drosophila melanogaster, GI221329674, Length=503, Percent_Identity=27.037773359841, Blast_Score=187, Evalue=2e-47, Organism=Drosophila melanogaster, GI281364394, Length=534, Percent_Identity=28.6516853932584, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI28574704, Length=534, Percent_Identity=28.6516853932584, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI17136950, Length=534, Percent_Identity=28.6516853932584, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI28574702, Length=534, Percent_Identity=28.6516853932584, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI45550877, Length=531, Percent_Identity=27.1186440677966, Blast_Score=181, Evalue=1e-45, Organism=Drosophila melanogaster, GI24639516, Length=530, Percent_Identity=25.6603773584906, Blast_Score=179, Evalue=5e-45, Organism=Drosophila melanogaster, GI281363702, Length=504, Percent_Identity=29.3650793650794, Blast_Score=169, Evalue=3e-42, Organism=Drosophila melanogaster, GI45551183, Length=396, Percent_Identity=29.5454545454545, Blast_Score=169, Evalue=6e-42, Organism=Drosophila melanogaster, GI45551088, Length=503, Percent_Identity=28.0318091451292, Blast_Score=166, Evalue=4e-41, Organism=Drosophila melanogaster, GI24652942, Length=503, Percent_Identity=28.0318091451292, Blast_Score=166, Evalue=4e-41, Organism=Drosophila melanogaster, GI281365034, Length=513, Percent_Identity=28.4600389863548, Blast_Score=165, Evalue=6e-41, Organism=Drosophila melanogaster, GI24655079, Length=564, Percent_Identity=26.241134751773, Blast_Score=165, Evalue=6e-41, Organism=Drosophila melanogaster, GI24661428, Length=506, Percent_Identity=29.2490118577075, Blast_Score=165, Evalue=8e-41, Organism=Drosophila melanogaster, GI19921352, Length=519, Percent_Identity=28.5163776493256, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI24584353, Length=519, Percent_Identity=28.5163776493256, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI19921936, Length=514, Percent_Identity=26.4591439688716, Blast_Score=159, Evalue=4e-39, Organism=Drosophila melanogaster, GI24582567, Length=515, Percent_Identity=26.7961165048544, Blast_Score=156, Evalue=4e-38, Organism=Drosophila melanogaster, GI281363700, Length=336, Percent_Identity=32.4404761904762, Blast_Score=148, Evalue=8e-36, Organism=Drosophila melanogaster, GI24639853, Length=502, Percent_Identity=26.2948207171315, Blast_Score=145, Evalue=5e-35, Organism=Drosophila melanogaster, GI24582569, Length=470, Percent_Identity=25.9574468085106, Blast_Score=113, Evalue=4e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000175 [H]
Pfam domain/function: PF00209 SNF [H]
EC number: NA
Molecular weight: Translated: 54460; Mature: 54329
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSNTTSTVKRATFSGRNAFIIAAIGSAVGLGNIWRFPYTTYENGGGAFIIPYIVALLTA CCCCCHHHHHHHHCCCCCEEEEEECCCHHCCCCEECCCCCEEECCCCEEHHHHHHHHHHC GIPLLFLDFAIGHRHRAAAPLSFRRLNQHFEVFGWWQVLVNVIIGIYYAVVLGWAAVYTY CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FSLTKAWGDKPVDFFVGEFLKMGDIANGISFDFVGMVVGPLIAVWIIALIVLALGVEKGI HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKTSSILMPVLVVMFIILVISSLFLPGATKGLDALFTPNWEKLADPSVWIAAYGQIFFSL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHH SICFGIMITYSSYLKKDSDLTGTGMVVGFANSSFEVLAGIGVFAALGFMASASGQEVSEV HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH AKGGIGLAFFAFPTIINEAPMGTLLGVLFFGSLTFAALTSFISVIEVIIAAVQDKLKLGR HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IASTFTVGLPMMLVSVILFGTTTGLPMLDVMDKFVNNFGIVAVAFVSLVAIIAKGKLSTL HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH GHHINKTSSLKVGTLWRLCVIITTGVLAFMLFSEIIKVVHEGYEGYPSWFINIFGWGMAV HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SLILVAFLLSRLKWQNETEFKVEQ HHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SSNTTSTVKRATFSGRNAFIIAAIGSAVGLGNIWRFPYTTYENGGGAFIIPYIVALLTA CCCCHHHHHHHHCCCCCEEEEEECCCHHCCCCEECCCCCEEECCCCEEHHHHHHHHHHC GIPLLFLDFAIGHRHRAAAPLSFRRLNQHFEVFGWWQVLVNVIIGIYYAVVLGWAAVYTY CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FSLTKAWGDKPVDFFVGEFLKMGDIANGISFDFVGMVVGPLIAVWIIALIVLALGVEKGI HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKTSSILMPVLVVMFIILVISSLFLPGATKGLDALFTPNWEKLADPSVWIAAYGQIFFSL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHH SICFGIMITYSSYLKKDSDLTGTGMVVGFANSSFEVLAGIGVFAALGFMASASGQEVSEV HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH AKGGIGLAFFAFPTIINEAPMGTLLGVLFFGSLTFAALTSFISVIEVIIAAVQDKLKLGR HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IASTFTVGLPMMLVSVILFGTTTGLPMLDVMDKFVNNFGIVAVAFVSLVAIIAKGKLSTL HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH GHHINKTSSLKVGTLWRLCVIITTGVLAFMLFSEIIKVVHEGYEGYPSWFINIFGWGMAV HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SLILVAFLLSRLKWQNETEFKVEQ HHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]