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The map label for this gene is tapC [H]

Identifier: 126176110

GI number: 126176110

Start: 4615274

End: 4616542

Strand: Direct

Name: tapC [H]

Synonym: Sbal_3920

Alternate gene names: 126176110

Gene position: 4615274-4616542 (Clockwise)

Preceding gene: 126176109

Following gene: 126176111

Centisome position: 90.01

GC content: 46.1

Gene sequence:

>1269_bases
ATGGCTACGGCAACGACTACAAGAAAGTCTCGTACCAAGAAAACCGAGCAAAAGAGCCAACCAAAAATTTATACCTTTGA
ATGGAAAGGCCTAAATCGCGACGGTAAGAAAACTGCGGGAGAGCTAAGAGGTGCAACTGCCGCCGAAATCCGTAGTCAGT
TAAAATCCCAAGGAGTGAACCCTAAGAGCGTTCGTAAGCAGTCATCAGCACTATTTAAGTTAGGTGATCCGAAAATCACC
CCTATGGATATTGCTGTAATTACTCGCCAAATTGCGACTATGCTAGCAGCGGGCGTACCTTTAGTAACCACAATTGAACT
ACTCGGCCGCGGTCACGAAAAAGCTAAGGTGCGAGAACTATTAGGAAATATCCTCAGCGAAATTCAATCAGGGATTCCCT
TATCCGATGCAATGCGCCCCCATAGGCGTTACTTCGATGAACTTTATGTCGACCTAGTCGCTGCAGGCGAGCACTCTGGC
TCACTAGATTTGGTTTTTGACCGCGTTGCTACTTACAGAGAAAAATCAGAAGCACTGAAGTCCAAAATTAAGAAGGCCAT
GTTCTATCCTGCTGCAGTTGTCATAGTCGCAATCTTAGTCACATCCTTATTACTATTGTTTGTGGTGCCTCAATTTGAAG
AAATTTTTAAGGGCTTTGGTGCTGAACTGCCCGCCTTTACCCAACTGGTGCTGCATATTTCCCGCGGCTTACAATCCTCT
TGGTATATCTTTTTAGCCGCCATTATCGGCGGAGTATTTTTGTTTGTACGGGCGCACCGAAACTCACAAATAGTGCGAGA
TAGAGTCGATGAAGCTGTGCTTAAAATCCCCGCTATTGGGTCTATATTACACAAAGGTGCCATGGCACGATTCGCTCGGA
CTTTAGCTACTACCTTCGCCGCGGGCGTGCCGTTAATTGATGGTCTCGAGTCTGCCGCCGGCGCATCGGGTAATGCGGTA
TACCGCAAAGCCATTTTAAAAATCCGTCAAGAAGTGATGGCGGGGATGCAGATGAATGTGGCGATGCAAACCACAGGCCT
GTTCCCCGATATGTTAGTGCAAATGGTGATGATAGGCGAAGAATCAGGCTCACTAGATAACATGCTCAATAAAGTATCAA
CCATCTACGAAATGCAAGTAGATGATGCGGTTGATGGCTTATCAAGCCTGATAGAACCGATTATGATGGTGGTCATAGGT
ACTGTCGTTGGTGGCCTAATTGTTGCTATGTATTTGCCCATCTTCCAAATGGGTAAAATCGTCAGCTAA

Upstream 100 bases:

>100_bases
AGAGCGGTGCAAACTTCAATTTTAAAGCTAGCATAATTTAGCAGATGCAGCTTTCTACTAATTGGCTATTGAAAAGCGGA
TTATTTTACAGGAATAATTT

Downstream 100 bases:

>100_bases
TCTATTTGATTCAAATTAAAATAAGAAAATATAATGTCAGAATTCATCTCCCTTTTGGGCCAGCACCCTTATCTCTTTAT
TGCTCTAAGCTTTATTTTTG

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MATATTTRKSRTKKTEQKSQPKIYTFEWKGLNRDGKKTAGELRGATAAEIRSQLKSQGVNPKSVRKQSSALFKLGDPKIT
PMDIAVITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGNILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKSEALKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIIGGVFLFVRAHRNSQIVRDRVDEAVLKIPAIGSILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKIVS

Sequences:

>Translated_422_residues
MATATTTRKSRTKKTEQKSQPKIYTFEWKGLNRDGKKTAGELRGATAAEIRSQLKSQGVNPKSVRKQSSALFKLGDPKIT
PMDIAVITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGNILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKSEALKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIIGGVFLFVRAHRNSQIVRDRVDEAVLKIPAIGSILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKIVS
>Mature_421_residues
ATATTTRKSRTKKTEQKSQPKIYTFEWKGLNRDGKKTAGELRGATAAEIRSQLKSQGVNPKSVRKQSSALFKLGDPKITP
MDIAVITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGNILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSGS
LDLVFDRVATYREKSEALKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSSW
YIFLAAIIGGVFLFVRAHRNSQIVRDRVDEAVLKIPAIGSILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVY
RKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIGT
VVGGLIVAMYLPIFQMGKIVS

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=401, Percent_Identity=28.428927680798, Blast_Score=194, Evalue=7e-51,
Organism=Escherichia coli, GI1786295, Length=401, Percent_Identity=29.6758104738155, Blast_Score=172, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 46032; Mature: 45901

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATATTTRKSRTKKTEQKSQPKIYTFEWKGLNRDGKKTAGELRGATAAEIRSQLKSQGVN
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCC
PKSVRKQSSALFKLGDPKITPMDIAVITRQIATMLAAGVPLVTTIELLGRGHEKAKVREL
HHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
LGNILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSGSLDLVFDRVATYREKSEALK
HHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
SKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
WYIFLAAIIGGVFLFVRAHRNSQIVRDRVDEAVLKIPAIGSILHKGAMARFARTLATTFA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGVPLIDGLESAAGASGNAVYRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGE
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCC
ESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VS
CC
>Mature Secondary Structure 
ATATTTRKSRTKKTEQKSQPKIYTFEWKGLNRDGKKTAGELRGATAAEIRSQLKSQGVN
CCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCC
PKSVRKQSSALFKLGDPKITPMDIAVITRQIATMLAAGVPLVTTIELLGRGHEKAKVREL
HHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
LGNILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSGSLDLVFDRVATYREKSEALK
HHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
SKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
WYIFLAAIIGGVFLFVRAHRNSQIVRDRVDEAVLKIPAIGSILHKGAMARFARTLATTFA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGVPLIDGLESAAGASGNAVYRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGE
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCC
ESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]