Click here to switch to the map view.

The map label for this gene is ppdD [C]

Identifier: 126176108

GI number: 126176108

Start: 4612907

End: 4613338

Strand: Direct

Name: ppdD [C]

Synonym: Sbal_3918

Alternate gene names: 126176108

Gene position: 4612907-4613338 (Clockwise)

Preceding gene: 126176107

Following gene: 126176109

Centisome position: 89.97

GC content: 43.75

Gene sequence:

>432_bases
ATGAAGGCCATGAATTTAAAGAAAAAAGCTCAGGGTTTTACTCTGATCGAATTAATGATCGTAGTCGCCATTATCGGTAT
TTTGGCCGCTGTCGCACTACCAGCGTATCGTGACTATGTAGCCGCATCACATGGAGGTGCAGCGATGAAAGGTGTTAGTT
CATATACATCAAAAGCTGTTGCATGTGTTCAATCAGGTATCGGTTGTGCTTCTATTGATGCAGATGTAGCGGCTGTCGCT
GGTTTAACCGCAGGGGCTGCTTTTGCAGAAGCAACAGACAATACATTAGCATACACTGATGGAACATGTGTTATTACTGC
CACAATTACTTCAGCTGGTACTGTAAGCTATGCTGCAACTCAAGGAGCTGATGCAGGTTCAACTACAGCAGAACAATGCG
CTAAAGGTGCCGGTAAATTAGTAACATACTAA

Upstream 100 bases:

>100_bases
AAGTTTGTCGAGATAAAACAATTTATAGTGTAAAACAGCGTTTAGGTTTAACACTCTATTCAACCACAGTAAGTCACTAA
ATAGTTAGCTGGAGAGAAAA

Downstream 100 bases:

>100_bases
TTTATATATTCATTTATGACTATGTTGAGCACACTATAAATAAAACTAGTGAGCTCAACTTTTAGTTATTCATTTAAGTG
ACAATTCGAATGCCTACAAC

Product: methylation site containing protein

Products: NA

Alternate protein names: General Secretion Pathway Protein; Methylation

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKAMNLKKKAQGFTLIELMIVVAIIGILAAVALPAYRDYVAASHGGAAMKGVSSYTSKAVACVQSGIGCASIDADVAAVA
GLTAGAAFAEATDNTLAYTDGTCVITATITSAGTVSYAATQGADAGSTTAEQCAKGAGKLVTY

Sequences:

>Translated_143_residues
MKAMNLKKKAQGFTLIELMIVVAIIGILAAVALPAYRDYVAASHGGAAMKGVSSYTSKAVACVQSGIGCASIDADVAAVA
GLTAGAAFAEATDNTLAYTDGTCVITATITSAGTVSYAATQGADAGSTTAEQCAKGAGKLVTY
>Mature_143_residues
MKAMNLKKKAQGFTLIELMIVVAIIGILAAVALPAYRDYVAASHGGAAMKGVSSYTSKAVACVQSGIGCASIDADVAAVA
GLTAGAAFAEATDNTLAYTDGTCVITATITSAGTVSYAATQGADAGSTTAEQCAKGAGKLVTY

Specific function: Not Yet Known. [C]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14078; Mature: 14078

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAMNLKKKAQGFTLIELMIVVAIIGILAAVALPAYRDYVAASHGGAAMKGVSSYTSKAV
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ACVQSGIGCASIDADVAAVAGLTAGAAFAEATDNTLAYTDGTCVITATITSAGTVSYAAT
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEEECCCCCEEEHHC
QGADAGSTTAEQCAKGAGKLVTY
CCCCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKAMNLKKKAQGFTLIELMIVVAIIGILAAVALPAYRDYVAASHGGAAMKGVSSYTSKAV
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ACVQSGIGCASIDADVAAVAGLTAGAAFAEATDNTLAYTDGTCVITATITSAGTVSYAAT
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEEECCCCCEEEHHC
QGADAGSTTAEQCAKGAGKLVTY
CCCCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA