| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is hsdM [C]
Identifier: 126175909
GI number: 126175909
Start: 4342999
End: 4344642
Strand: Reverse
Name: hsdM [C]
Synonym: Sbal_3715
Alternate gene names: 126175909
Gene position: 4344642-4342999 (Counterclockwise)
Preceding gene: 126175910
Following gene: 126175905
Centisome position: 84.73
GC content: 38.81
Gene sequence:
>1644_bases ATGACCCAAGAACAACTCAACGATTTAGGTAAAATCCTGTGGGATATCGCCGACAGTTTACGTGGTGCAATGAATGCCGA TGACTTTCGCGACTATATGTTGTCCTTTTTATTTTTACGATATTTATCAGATAACTATGAAAAAGCGGCGCAAAAAGAAC TCGGTCGCGATTATCCTATACTGGCTAAAGATGATAAAACTGCACCATTAGCATTGTGGTATACAGAATATAGAGAGGAT ATAGCTGAATTTGAAAAACAAATGCGTCGTAAACTGCATTATGTGATTGAGCCGCGCCATCTGTGGACTAGCATTGCCGA ACTTGCACGTACTCAAAATAGCGAGTTACTGCAAACCTTAGAAGCGGGCTTTAAATACATTGAAGAGCAAAGCTTTGACA GCAGCTTTAAAGGGTTATTTTCTGAGATTAATTTAAACTCTGAAAAGCTCGGTAAATCTCCCACTGATCGTAACAAAAAA CTTTGTACTATCATTCAAAAAATATCTGAAGGTATTGCCGAGTTTTCTACCGATAGCGATATTTTAGGTGATGCCTATGA ATATTTAATAGGTGAGTTTGCCGCAGGCTCGGGTAAAAAAGCCGGTGAGTTTTATACTCCGCAACCTATTTCGACTATTT TGTCGGAAATTGTCACCCTTGACAGTCAAGAGCCAAAAACTGGCAAAAAGAAAAAACTCGACAAGGTATTAGACTTTGCT TGTGGCTCAGGTTCGTTATTGCTCAATGTGCGTAAGCATATTGTGGATGCGGGCGGTACTGTTGGAAAAATTTACGGCCA AGAAAAAAATATTACTACCTTTAACCTTGCCCGAATGAACATGCTATTACATGGAGTGAAAGATACCGAGTTTGAGATCC ACCACGGCGATACTTTATTAAATGATTGGGACATACTCAGTGAGATGAATCCCGCGAAAAAACTTAAATGTGATGCGGTA GTGGCTAACCCCCCTTTTAGTTACCGCTGGGATCCAAGTGAAGCACAGGGCGAAGATTTCCGTTTTAAAAGCCACGGTTT AGCGCCAAAATCTGCTGCTGATTTTGCTTTTTTATTGCACGGTTTTCACTTTTTAAGTGATGAAGGCACCATGGCGATTA TTTTGCCTCATGGCGTATTATTTAGAGGCGGCGCAGAGCAACGTATTCGCAAGAAATTACTCAACGATGGCCATATAGAT ACGGTCATTGGTTTACCTGCCAATTTATTTTTCTCTACGGGTATCCCTGTTTGCATTATCGTGTTGAAAAAATGTAAAAA GTACGATGATATATTATTTATTAATGCCAGCGAACATTATGAAAAAGGTAAACGCCAAAATAAGTTACGCGAAGGTAAAG GTGATGAGCCCAACGACATTAAAAAAATCGTTGAAACTTATCAATACCGTAGTGAAGATGAACGTTACTCACGCCGAGTT TCGATGGCTGAGATTGAAAAAAACGATTTTAATCTCAATATTTCTCGTTATGTAAGTACCGCAAAAGATACGGTAAAAAT TGATCTTGCGAAAGAACAGCGAAAACTTGTTGATATAGAAAGTTCAATAACTTCAGCATTGATAGAGCATAATAAATTTT TATCTGAATTGGGTTTGGCATTGTTGCCAGGTGAGCAAAATTAA
Upstream 100 bases:
>100_bases GCGCTGTTTCCAAAGCCGTTACTGCATCAAGATCCTTCTGCACACCAAGAACCAGCAGTACAACAAGTGCAAACCGAACA ACTCCAAGAGATTAATTAGT
Downstream 100 bases:
>100_bases AATAATTTCAGGCTTTGGTTGCATAGTTAATTCGATAAAATTAAAGGGGTAAATTAATTTTCGAAAACATCTAAATTCAG TAAGTTTGTAAAATCCCCGT
Product: type I restriction-modification system, M subunit
Products: NA
Alternate protein names: M.MpnORFDP [H]
Number of amino acids: Translated: 547; Mature: 546
Protein sequence:
>547_residues MTQEQLNDLGKILWDIADSLRGAMNADDFRDYMLSFLFLRYLSDNYEKAAQKELGRDYPILAKDDKTAPLALWYTEYRED IAEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQTLEAGFKYIEEQSFDSSFKGLFSEINLNSEKLGKSPTDRNKK LCTIIQKISEGIAEFSTDSDILGDAYEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDKVLDFA CGSGSLLLNVRKHIVDAGGTVGKIYGQEKNITTFNLARMNMLLHGVKDTEFEIHHGDTLLNDWDILSEMNPAKKLKCDAV VANPPFSYRWDPSEAQGEDFRFKSHGLAPKSAADFAFLLHGFHFLSDEGTMAIILPHGVLFRGGAEQRIRKKLLNDGHID TVIGLPANLFFSTGIPVCIIVLKKCKKYDDILFINASEHYEKGKRQNKLREGKGDEPNDIKKIVETYQYRSEDERYSRRV SMAEIEKNDFNLNISRYVSTAKDTVKIDLAKEQRKLVDIESSITSALIEHNKFLSELGLALLPGEQN
Sequences:
>Translated_547_residues MTQEQLNDLGKILWDIADSLRGAMNADDFRDYMLSFLFLRYLSDNYEKAAQKELGRDYPILAKDDKTAPLALWYTEYRED IAEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQTLEAGFKYIEEQSFDSSFKGLFSEINLNSEKLGKSPTDRNKK LCTIIQKISEGIAEFSTDSDILGDAYEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDKVLDFA CGSGSLLLNVRKHIVDAGGTVGKIYGQEKNITTFNLARMNMLLHGVKDTEFEIHHGDTLLNDWDILSEMNPAKKLKCDAV VANPPFSYRWDPSEAQGEDFRFKSHGLAPKSAADFAFLLHGFHFLSDEGTMAIILPHGVLFRGGAEQRIRKKLLNDGHID TVIGLPANLFFSTGIPVCIIVLKKCKKYDDILFINASEHYEKGKRQNKLREGKGDEPNDIKKIVETYQYRSEDERYSRRV SMAEIEKNDFNLNISRYVSTAKDTVKIDLAKEQRKLVDIESSITSALIEHNKFLSELGLALLPGEQN >Mature_546_residues TQEQLNDLGKILWDIADSLRGAMNADDFRDYMLSFLFLRYLSDNYEKAAQKELGRDYPILAKDDKTAPLALWYTEYREDI AEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQTLEAGFKYIEEQSFDSSFKGLFSEINLNSEKLGKSPTDRNKKL CTIIQKISEGIAEFSTDSDILGDAYEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDKVLDFAC GSGSLLLNVRKHIVDAGGTVGKIYGQEKNITTFNLARMNMLLHGVKDTEFEIHHGDTLLNDWDILSEMNPAKKLKCDAVV ANPPFSYRWDPSEAQGEDFRFKSHGLAPKSAADFAFLLHGFHFLSDEGTMAIILPHGVLFRGGAEQRIRKKLLNDGHIDT VIGLPANLFFSTGIPVCIIVLKKCKKYDDILFINASEHYEKGKRQNKLREGKGDEPNDIKKIVETYQYRSEDERYSRRVS MAEIEKNDFNLNISRYVSTAKDTVKIDLAKEQRKLVDIESSITSALIEHNKFLSELGLALLPGEQN
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=261, Percent_Identity=26.4367816091954, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR004546 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 62074; Mature: 61943
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQEQLNDLGKILWDIADSLRGAMNADDFRDYMLSFLFLRYLSDNYEKAAQKELGRDYPI CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCE LAKDDKTAPLALWYTEYREDIAEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQTL EECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHH EAGFKYIEEQSFDSSFKGLFSEINLNSEKLGKSPTDRNKKLCTIIQKISEGIAEFSTDSD HHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH ILGDAYEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDKVLDFA HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC CGSGSLLLNVRKHIVDAGGTVGKIYGQEKNITTFNLARMNMLLHGVKDTEFEIHHGDTLL CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEHHHHHHHHHHCCCCCCEEEECCCCHH NDWDILSEMNPAKKLKCDAVVANPPFSYRWDPSEAQGEDFRFKSHGLAPKSAADFAFLLH CHHHHHHCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH GFHFLSDEGTMAIILPHGVLFRGGAEQRIRKKLLNDGHIDTVIGLPANLFFSTGIPVCII HHHHCCCCCCEEEEECCCEEECCCHHHHHHHHHCCCCCCEEEECCCHHHHHHCCHHHHHH VLKKCKKYDDILFINASEHYEKGKRQNKLREGKGDEPNDIKKIVETYQYRSEDERYSRRV HHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH SMAEIEKNDFNLNISRYVSTAKDTVKIDLAKEQRKLVDIESSITSALIEHNKFLSELGLA HHHHHCCCCCCEEHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE LLPGEQN ECCCCCC >Mature Secondary Structure TQEQLNDLGKILWDIADSLRGAMNADDFRDYMLSFLFLRYLSDNYEKAAQKELGRDYPI CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCE LAKDDKTAPLALWYTEYREDIAEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQTL EECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHH EAGFKYIEEQSFDSSFKGLFSEINLNSEKLGKSPTDRNKKLCTIIQKISEGIAEFSTDSD HHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH ILGDAYEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDKVLDFA HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC CGSGSLLLNVRKHIVDAGGTVGKIYGQEKNITTFNLARMNMLLHGVKDTEFEIHHGDTLL CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEHHHHHHHHHHCCCCCCEEEECCCCHH NDWDILSEMNPAKKLKCDAVVANPPFSYRWDPSEAQGEDFRFKSHGLAPKSAADFAFLLH CHHHHHHCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH GFHFLSDEGTMAIILPHGVLFRGGAEQRIRKKLLNDGHIDTVIGLPANLFFSTGIPVCII HHHHCCCCCCEEEEECCCEEECCCHHHHHHHHHCCCCCCEEEECCCHHHHHHCCHHHHHH VLKKCKKYDDILFINASEHYEKGKRQNKLREGKGDEPNDIKKIVETYQYRSEDERYSRRV HHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH SMAEIEKNDFNLNISRYVSTAKDTVKIDLAKEQRKLVDIESSITSALIEHNKFLSELGLA HHHHHCCCCCCEEHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE LLPGEQN ECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8948633 [H]