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The map label for this gene is ycaN [H]

Identifier: 126175905

GI number: 126175905

Start: 4337123

End: 4338157

Strand: Reverse

Name: ycaN [H]

Synonym: Sbal_3711

Alternate gene names: 126175905

Gene position: 4338157-4337123 (Counterclockwise)

Preceding gene: 126175909

Following gene: 126175903

Centisome position: 84.61

GC content: 45.7

Gene sequence:

>1035_bases
TTGGGATTATCAGTCCCACATAATGAGATTGAACTTAAGGTCAAAATGAAGACAGAGGACTTAGCGTTATTCCACCGAAT
TGCTGAAACCGGTAGTTTGATTGAAGCGGCTGATTTGCTTAACTTGCCAAAATCGACTGTCAGTCGGCGTTTGCAAGCCT
TGGAAGATGAGCTGAATATTAAATTGTTCCACCGCCAGAGCCGCTCCATGACGCTCACGTCTGCGGGCAGTCATTTCTAC
CAGCGCTCGCAAAACATTCTGGCCCAGCTCGATGAAACCCTATTCGAAATGACCAATGATGATGCTGAGATCAGCGGGCA
TTTGCGCATTCAAATGTTCCCGATCCACAGCATGAAAATCTTGATGCAAGCCATTTTCCGCTTTATGGATATGCACCCTA
AACTCACCTTAGAAGTTATCAGCAGTTCAGAATCCGTTGATATGGTGAAACATAATCTCGATGTGGCCTTTGTGGTTGAG
CCTGCGTTGGATACCTTAGATTTAGTGGTGCGGCCAATTTTTACCACTGACTTACGTTTTTACGCGAGTCCTCAATATTT
AGCGGTACACGGCATACCTAAAACACCGAAAGAGATTGAAGCGCATAATGTGTCTATGTTCCGTTTATCCAACGGCAAAA
TTTTTAATGAGTTATTTATCGGTTCAGAACAAGAGGTGAGAGTCAGAGGCAATTTCTGCTCTAACAGTATTGAAGTGGCG
GTTGAGTTTGGATTGCAAGGACGCGGTATCGTGTATGCGCCTGCTGAGGTCGTGGATGAATATGTGCAAACCGGTGAGTT
GGTGACTCTGTTACCTGAAATCCAGCCCCACCAAGGCGAATGTTTCTTAGCTTATCCATCAAGACGTTACGTGAGTTTAG
CCTGTCGACGCTTTATCGACTACATAATGCAAGAGTTAGTGCCAAATGGCGTGCCGATCAACATGAGCGAGCAAGGCCCA
CGTCGATCCTGCAAAGCCTCTACGGGAGATTTTTCAGACGACGTGTTGCGCTTTCCCGTTAAAAAATCAAGCTAG

Upstream 100 bases:

>100_bases
AGTCGATATGATTTCATGGTGGCGATTTCCTAGTTAACAAGTTGTCAGCATTTCTGGGCGCGAAGATACCAGCTAAAGTA
GTTGCAATAAACGGGATACT

Downstream 100 bases:

>100_bases
TTTATCCCTCGCGAATGGCGTTGGCGGTTGTGACCTTTGTCGGTTCACAGATCCGCTGCGCCAGCCAGTAACAGGCAATC
CCCATCAAAATATTGGTCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MGLSVPHNEIELKVKMKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSHFY
QRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLEVISSSESVDMVKHNLDVAFVVE
PALDTLDLVVRPIFTTDLRFYASPQYLAVHGIPKTPKEIEAHNVSMFRLSNGKIFNELFIGSEQEVRVRGNFCSNSIEVA
VEFGLQGRGIVYAPAEVVDEYVQTGELVTLLPEIQPHQGECFLAYPSRRYVSLACRRFIDYIMQELVPNGVPINMSEQGP
RRSCKASTGDFSDDVLRFPVKKSS

Sequences:

>Translated_344_residues
MGLSVPHNEIELKVKMKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSHFY
QRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLEVISSSESVDMVKHNLDVAFVVE
PALDTLDLVVRPIFTTDLRFYASPQYLAVHGIPKTPKEIEAHNVSMFRLSNGKIFNELFIGSEQEVRVRGNFCSNSIEVA
VEFGLQGRGIVYAPAEVVDEYVQTGELVTLLPEIQPHQGECFLAYPSRRYVSLACRRFIDYIMQELVPNGVPINMSEQGP
RRSCKASTGDFSDDVLRFPVKKSS
>Mature_343_residues
GLSVPHNEIELKVKMKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSHFYQ
RSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLEVISSSESVDMVKHNLDVAFVVEP
ALDTLDLVVRPIFTTDLRFYASPQYLAVHGIPKTPKEIEAHNVSMFRLSNGKIFNELFIGSEQEVRVRGNFCSNSIEVAV
EFGLQGRGIVYAPAEVVDEYVQTGELVTLLPEIQPHQGECFLAYPSRRYVSLACRRFIDYIMQELVPNGVPINMSEQGPR
RSCKASTGDFSDDVLRFPVKKSS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=30.3754266211604, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=30.7958477508651, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=29.3729372937294, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=25.085910652921, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=26.4214046822742, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=25.5172413793103, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=26.3157894736842, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI145693105, Length=127, Percent_Identity=28.3464566929134, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=129, Percent_Identity=28.6821705426357, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=181, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=298, Percent_Identity=25.503355704698, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786448, Length=307, Percent_Identity=23.1270358306189, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788297, Length=149, Percent_Identity=28.1879194630872, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1789173, Length=184, Percent_Identity=25.5434782608696, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38936; Mature: 38805

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLSVPHNEIELKVKMKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNI
CCCCCCCCCEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCE
KLFHRQSRSMTLTSAGSHFYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKI
EEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHH
LMQAIFRFMDMHPKLTLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRF
HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCEEE
YASPQYLAVHGIPKTPKEIEAHNVSMFRLSNGKIFNELFIGSEQEVRVRGNFCSNSIEVA
EECCCEEEEECCCCCCHHHHHCCEEEEEECCCCEEEHHHCCCCCEEEEECCCCCCCEEEE
VEFGLQGRGIVYAPAEVVDEYVQTGELVTLLPEIQPHQGECFLAYPSRRYVSLACRRFID
EEECCCCCCEEECCHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHH
YIMQELVPNGVPINMSEQGPRRSCKASTGDFSDDVLRFPVKKSS
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure 
GLSVPHNEIELKVKMKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNI
CCCCCCCCEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCE
KLFHRQSRSMTLTSAGSHFYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKI
EEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHH
LMQAIFRFMDMHPKLTLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRF
HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCEEE
YASPQYLAVHGIPKTPKEIEAHNVSMFRLSNGKIFNELFIGSEQEVRVRGNFCSNSIEVA
EECCCEEEEECCCCCCHHHHHCCEEEEEECCCCEEEHHHCCCCCEEEEECCCCCCCEEEE
VEFGLQGRGIVYAPAEVVDEYVQTGELVTLLPEIQPHQGECFLAYPSRRYVSLACRRFID
EEECCCCCCEEECCHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHH
YIMQELVPNGVPINMSEQGPRRSCKASTGDFSDDVLRFPVKKSS
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]