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The map label for this gene is dacA [H]

Identifier: 126175479

GI number: 126175479

Start: 3841571

End: 3842746

Strand: Direct

Name: dacA [H]

Synonym: Sbal_3279

Alternate gene names: 126175479

Gene position: 3841571-3842746 (Clockwise)

Preceding gene: 126175478

Following gene: 126175480

Centisome position: 74.92

GC content: 45.07

Gene sequence:

>1176_bases
ATGATGAATTTTGTAAAAAGTCCCATTAAAACATTGCTGCTAATTTCCAGTGCCTCTCTCCCCGTTTATGCTGCGCAGCC
TATTATTACACCTGATGCACCTTCAGTAGCCGCCAAGGCGTTCGTATTGATGGATTATAATTCGGGTCAGATTATTGCTG
AAAGTAACGCTTACGAAAGCCTTAACCCAGCCAGTTTAACTAAGATGATGACCAGCTACGTGATCGGTCAAGAAATCAAA
GCGGGCAATGTCTCCGTTGATGATGATGTGACTATCAGTAAAAATGCTTGGTCTAAAAACTTCTCAGACTCTTCTAAGAT
GTTCATTGAAGTGGGCACTACGGTTAAAGTGGGCGATCTAAACCGCGGTATCATCATTCAATCGGGTAACGATGCGTGTG
TGGCGATGGCCGAGCACATTGCCGGTACTGAAGGCGCCTTCGTTGACATGATGAACTCATGGGCGAAGCAATTGGGGATG
CGTGATAGCTACTTCGAAAACGCCCACGGTTTAGATGCAGAAAACCACAAATCCACCGCCTATGATATGGCATTACTGGG
CGCAGCGTTAATCCGCGACGAGCCAGATGAATACCACATCTATAGCGAAAAATTCTATACATTCAATGGTATCAAACAAT
ACAACCGTAATGGTTTATTGTGGGATAACAGCATGAACGTGGACGGTATCAAAACCGGTCACACCTCAGGTGCGGGCTAC
AACTTAGTGGCATCGGCAACCAAAGACGGCATGCGTTTAATTTCAGTGGTGATGGGCACTCAAAGTGAATCTGCCCGTAA
AGCTGAAAGTAAGAAATTACTGACCTATGGCTTCCGTTTCTTCGAAACCGTAACACCATACAAGGCGGGTGATAGCTTTA
TCACTCAGCAAATTTGGTACGGTGACAAGAGCACGGTTGATTTAGGCGTGGCAACTGACACACCTATCACCATCAGCCGT
GGCCGTGGTAAAGACTTGAAAGCTAACTTCGAGCTGACTAAACCATTAGATGCACCTTTAAAGAAAGGTGAAACTGTTGG
CCGTCTATTCTTCCAACTTGATGGTAAAGACATCGCCCAGTTCCCACTGGTGACGTTGCAAGAAGTCAACGAAGGCAGCT
GGTTTAGTAAATTAGTAGATTACTTTAAGCAGATGTTTTCTGGATGGTTTAGCTAA

Upstream 100 bases:

>100_bases
GAAGGAACCTTCACTAAAACCCACTGTCGGAAAGTGGTACACTGTTGAAGATCTTCTCGAATCCTTTCCATTTCATACAA
CTAAAAGACGTGCCAAGTTA

Downstream 100 bases:

>100_bases
GCTAAGTCACATAAATAAAGCCACCTTCGGGTGGCTTTATTTTTTTGGGGAGTGCATCGCCCTTGAATCGGGTATAATCG
TCACCATATATATCCCAATA

Product: Serine-type D-Ala-D-Ala carboxypeptidase

Products: NA

Alternate protein names: DD-carboxypeptidase; DD-peptidase; Penicillin-binding protein 5; PBP-5 [H]

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MMNFVKSPIKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIK
AGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGM
RDSYFENAHGLDAENHKSTAYDMALLGAALIRDEPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGY
NLVASATKDGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDLGVATDTPITISR
GRGKDLKANFELTKPLDAPLKKGETVGRLFFQLDGKDIAQFPLVTLQEVNEGSWFSKLVDYFKQMFSGWFS

Sequences:

>Translated_391_residues
MMNFVKSPIKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIK
AGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGM
RDSYFENAHGLDAENHKSTAYDMALLGAALIRDEPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGY
NLVASATKDGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDLGVATDTPITISR
GRGKDLKANFELTKPLDAPLKKGETVGRLFFQLDGKDIAQFPLVTLQEVNEGSWFSKLVDYFKQMFSGWFS
>Mature_391_residues
MMNFVKSPIKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIK
AGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGM
RDSYFENAHGLDAENHKSTAYDMALLGAALIRDEPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGY
NLVASATKDGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDLGVATDTPITISR
GRGKDLKANFELTKPLDAPLKKGETVGRLFFQLDGKDIAQFPLVTLQEVNEGSWFSKLVDYFKQMFSGWFS

Specific function: Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors [H]

COG id: COG1686

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Note=N-terminal lies in the periplasmic space (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S11 family [H]

Homologues:

Organism=Escherichia coli, GI1786851, Length=366, Percent_Identity=57.3770491803279, Blast_Score=427, Evalue=1e-121,
Organism=Escherichia coli, GI1787062, Length=370, Percent_Identity=54.8648648648649, Blast_Score=416, Evalue=1e-117,
Organism=Escherichia coli, GI87082022, Length=382, Percent_Identity=47.6439790575916, Blast_Score=356, Evalue=1e-99,
Organism=Escherichia coli, GI87082054, Length=251, Percent_Identity=27.0916334661355, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR015956
- InterPro:   IPR018044
- InterPro:   IPR012907
- InterPro:   IPR001967 [H]

Pfam domain/function: PF07943 PBP5_C; PF00768 Peptidase_S11 [H]

EC number: =3.4.16.4 [H]

Molecular weight: Translated: 43001; Mature: 43001

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNFVKSPIKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYES
CCCHHHHHHHHEEEEECCCCCEEECCCEECCCCCCHHEEEEEEEECCCCEEEECCCCCCC
LNPASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDL
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCEEEECCC
NRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTA
CCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHH
YDMALLGAALIRDEPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGY
HHHHHHHHHHHCCCCCCEEEECCEEEEECCHHHHCCCCEEECCCCCCCCEECCCCCCCCC
NLVASATKDGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWY
EEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHEEC
GDKSTVDLGVATDTPITISRGRGKDLKANFELTKPLDAPLKKGETVGRLFFQLDGKDIAQ
CCCCEEEEEEECCCCEEEECCCCCCEEECEEECCCCCCHHHCCCCEEEEEEEECCCCHHH
FPLVTLQEVNEGSWFSKLVDYFKQMFSGWFS
CCCCEEECCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMNFVKSPIKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYES
CCCHHHHHHHHEEEEECCCCCEEECCCEECCCCCCHHEEEEEEEECCCCEEEECCCCCCC
LNPASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDL
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCEEEECCC
NRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTA
CCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHH
YDMALLGAALIRDEPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGY
HHHHHHHHHHHCCCCCCEEEECCEEEEECCHHHHCCCCEEECCCCCCCCEECCCCCCCCC
NLVASATKDGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWY
EEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHEEC
GDKSTVDLGVATDTPITISRGRGKDLKANFELTKPLDAPLKKGETVGRLFFQLDGKDIAQ
CCCCEEEEEEECCCCEEEECCCCCCEEECEEECCCCCCHHHCCCCEEEEEEEECCCCHHH
FPLVTLQEVNEGSWFSKLVDYFKQMFSGWFS
CCCCEEECCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]