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The map label for this gene is rlpA [C]

Identifier: 126175478

GI number: 126175478

Start: 3840596

End: 3841429

Strand: Direct

Name: rlpA [C]

Synonym: Sbal_3278

Alternate gene names: 126175478

Gene position: 3840596-3841429 (Clockwise)

Preceding gene: 126175477

Following gene: 126175479

Centisome position: 74.9

GC content: 49.64

Gene sequence:

>834_bases
ATGCCTCTAAAAAATAATATTTTACAGCTTGCCGCCTTGGTTATGTGCTTCGCCCTTGCGGCGTGTTCTTCAAGCCCAAA
CAACGCCAGCAAGAAAAACATGGACCCGAACAAGGGCCGTTATTCGCTGAAGAATGACAAGCTGCCGCTGAATCCACCGA
ATGTGGATAATGTGCCGAACGCGACGCCTAAGTACGAGCCCTATAGCCGCCGTGGCAACAAGCCCTATACGGTTTATGGC
GAGTCTTATACTGTGATGAACACGGGCCAAGGCTTTAGTGAAACCGGCCGCGCCTCTTGGTATGGAGAGAAATTCCATGG
CTACGAGACCTCTAATGGCGAGCCCTATGACATGTATTCCATGTCGGGCGCCCATAAGACACTGCCACTGCCGAGTTACG
CTCGGATCACTAACTTAGATAACAATAAGCAAGTGATCATTCGCATCAACGACCGCGGACCATTCCACTCAGATCGTATT
CTCGATGTCTCCTATGCCGCCGCCTATAAACTCGGTATGCTCGGCAAAGGCACAGCACGGATCAAACTGGATGTGGTTTA
TGTTGGCAGTGTTGCAGCTACTAATTCGGCCGTAGTCAGCGCGCAAGATACGGGCAATCATTACATTCAGTTAGTGGCCT
CCAAAGATAGGGCCAAACTCAATGCCATGGCGAAAGAGCTTGAACAGAAATATCAGGTCAAGACCCGTGTACAAGCGGCA
AACAATATGTTTAGACTACAGCTCGGCCCCATAGGTCAGCCAGAGTTAGCCGACAAGCTACTCAATAACGTCAAGCAAAA
CGGTTTTCCTGAGGGCTATATCGTCCATGAATAA

Upstream 100 bases:

>100_bases
TGGCTTGGCTTAAATAACTTTTATGTGATCACTCGTTATAATCGTAGCCCTTTGTATTCAATGGCCGTTTATCAATTTAG
CCAACAATTAAAAGAACAGC

Downstream 100 bases:

>100_bases
TGGCCGTTTGCTCTGATCAGAATTGATTTAAAAATAGAGATGAAGGAACCTTCACTAAAACCCACTGTCGGAAAGTGGTA
CACTGTTGAAGATCTTCTCG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MPLKNNILQLAALVMCFALAACSSSPNNASKKNMDPNKGRYSLKNDKLPLNPPNVDNVPNATPKYEPYSRRGNKPYTVYG
ESYTVMNTGQGFSETGRASWYGEKFHGYETSNGEPYDMYSMSGAHKTLPLPSYARITNLDNNKQVIIRINDRGPFHSDRI
LDVSYAAAYKLGMLGKGTARIKLDVVYVGSVAATNSAVVSAQDTGNHYIQLVASKDRAKLNAMAKELEQKYQVKTRVQAA
NNMFRLQLGPIGQPELADKLLNNVKQNGFPEGYIVHE

Sequences:

>Translated_277_residues
MPLKNNILQLAALVMCFALAACSSSPNNASKKNMDPNKGRYSLKNDKLPLNPPNVDNVPNATPKYEPYSRRGNKPYTVYG
ESYTVMNTGQGFSETGRASWYGEKFHGYETSNGEPYDMYSMSGAHKTLPLPSYARITNLDNNKQVIIRINDRGPFHSDRI
LDVSYAAAYKLGMLGKGTARIKLDVVYVGSVAATNSAVVSAQDTGNHYIQLVASKDRAKLNAMAKELEQKYQVKTRVQAA
NNMFRLQLGPIGQPELADKLLNNVKQNGFPEGYIVHE
>Mature_276_residues
PLKNNILQLAALVMCFALAACSSSPNNASKKNMDPNKGRYSLKNDKLPLNPPNVDNVPNATPKYEPYSRRGNKPYTVYGE
SYTVMNTGQGFSETGRASWYGEKFHGYETSNGEPYDMYSMSGAHKTLPLPSYARITNLDNNKQVIIRINDRGPFHSDRIL
DVSYAAAYKLGMLGKGTARIKLDVVYVGSVAATNSAVVSAQDTGNHYIQLVASKDRAKLNAMAKELEQKYQVKTRVQAAN
NMFRLQLGPIGQPELADKLLNNVKQNGFPEGYIVHE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=179, Percent_Identity=34.6368715083799, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 30633; Mature: 30502

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLKNNILQLAALVMCFALAACSSSPNNASKKNMDPNKGRYSLKNDKLPLNPPNVDNVPN
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
ATPKYEPYSRRGNKPYTVYGESYTVMNTGQGFSETGRASWYGEKFHGYETSNGEPYDMYS
CCCCCCCHHHCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCCHHCCEECCCCCCEEEEE
MSGAHKTLPLPSYARITNLDNNKQVIIRINDRGPFHSDRILDVSYAAAYKLGMLGKGTAR
CCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHCCCCCCCEE
IKLDVVYVGSVAATNSAVVSAQDTGNHYIQLVASKDRAKLNAMAKELEQKYQVKTRVQAA
EEEEEEEECCEECCCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
NNMFRLQLGPIGQPELADKLLNNVKQNGFPEGYIVHE
CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECC
>Mature Secondary Structure 
PLKNNILQLAALVMCFALAACSSSPNNASKKNMDPNKGRYSLKNDKLPLNPPNVDNVPN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
ATPKYEPYSRRGNKPYTVYGESYTVMNTGQGFSETGRASWYGEKFHGYETSNGEPYDMYS
CCCCCCCHHHCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCCHHCCEECCCCCCEEEEE
MSGAHKTLPLPSYARITNLDNNKQVIIRINDRGPFHSDRILDVSYAAAYKLGMLGKGTAR
CCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHCCCCCCCEE
IKLDVVYVGSVAATNSAVVSAQDTGNHYIQLVASKDRAKLNAMAKELEQKYQVKTRVQAA
EEEEEEEECCEECCCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
NNMFRLQLGPIGQPELADKLLNNVKQNGFPEGYIVHE
CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]