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The map label for this gene is nusB

Identifier: 126175357

GI number: 126175357

Start: 3695882

End: 3696286

Strand: Reverse

Name: nusB

Synonym: Sbal_3156

Alternate gene names: 126175357

Gene position: 3696286-3695882 (Counterclockwise)

Preceding gene: 126175358

Following gene: 126175356

Centisome position: 72.09

GC content: 47.41

Gene sequence:

>405_bases
ATGAAGCCTTCTGAGCGCCGCAAGGCCCGCCGTTTAGCCGTTCAAGCCATCTATTCATGGCAACTAAGCGGGAATAATAT
TGCCGATGTCGAGCATGAGTTTTTAACTGAACAAAGTCTCGACGGTGTTGATGTAGCTTATTTTCGTGAGCTATTTTCAG
GCGTTGCAACGAAGAAAACCCAATTGGATGAGCTGATCATCCCGCATCTGGAACGCCCGATTGATGAAGTGTCTCCAGTA
GAGAAAGCCATAGTTCGTTTAGCGACCTATGAGCTGACTTTCCGTAAAGATGTGCCATACAAGGTCGCGATTAACGAAGC
GATTGAGTTGGCAAAAGCTTTCGGTGCGGACGAGAGTCATAAGTTTGTGAACGGACTGCTCGACAAACTGGTTGCACGCA
AGTAA

Upstream 100 bases:

>100_bases
CCAAAGCGGGTAACAAAGGCGGCGAAGCTGCTTTAAGTCTGCTTGAAATGGTCAATGTTCTGCAAGAACTTGAACAACAG
TTGTTATAGTAGGAAAAATA

Downstream 100 bases:

>100_bases
TAAAGACAAACGGTATCTTAGGATACCGTTTTTCATTGCTAACAAAGGTGGCCGATGTAAGTCGTGCCAAACTGTACAGT
GAAAGAATTCCAATTAATTG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFSGVATKKTQLDELIIPHLERPIDEVSPV
EKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGADESHKFVNGLLDKLVARK

Sequences:

>Translated_134_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFSGVATKKTQLDELIIPHLERPIDEVSPV
EKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGADESHKFVNGLLDKLVARK
>Mature_134_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFSGVATKKTQLDELIIPHLERPIDEVSPV
EKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGADESHKFVNGLLDKLVARK

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=129, Percent_Identity=65.8914728682171, Blast_Score=168, Evalue=9e-44,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_SHEB2 (B8E6W7)

Other databases:

- EMBL:   CP001252
- RefSeq:   YP_002357151.1
- ProteinModelPortal:   B8E6W7
- SMR:   B8E6W7
- GeneID:   7087987
- GenomeReviews:   CP001252_GR
- KEGG:   sbp:Sbal223_1215
- HOGENOM:   HBG734409
- OMA:   SHNDIAD
- ProtClustDB:   PRK00202
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 15227; Mature: 15227

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFSGVATKKT
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
QLDELIIPHLERPIDEVSPVEKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGADESH
HHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHCCCCHH
KFVNGLLDKLVARK
HHHHHHHHHHHCCC
>Mature Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFSGVATKKT
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
QLDELIIPHLERPIDEVSPVEKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGADESH
HHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHCCCCHH
KFVNGLLDKLVARK
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA