Definition Shewanella baltica OS155 chromosome, complete genome.
Accession NC_009052
Length 5,127,376

Click here to switch to the map view.

The map label for this gene is 126174175

Identifier: 126174175

GI number: 126174175

Start: 2266609

End: 2267100

Strand: Direct

Name: 126174175

Synonym: Sbal_1951

Alternate gene names: NA

Gene position: 2266609-2267100 (Clockwise)

Preceding gene: 126174174

Following gene: 126174176

Centisome position: 44.21

GC content: 50.41

Gene sequence:

>492_bases
ATGTCCGCTAAGGAGTCAGTAATGAAACAGCAAGAATTTGAAGTCCTTGAACATTTTCTGCAACGGGGCGGCTCACTGCG
TATGTTGGCTGATGTCGAGCAAAGTGACTTGAATGTGCTGTACCAATACGCGTTGCAGTTAATGGCCTGCCGAGACCAAC
AGGGGGCGAAGCGGATCTTTTACCTCTTGATGCGCATAGATCAATGGAATTACGACTACTGCTTTTCTCTAGGGATATGC
TGCCAGCAGTTACACGAACATGAAGAGGCCATTTTCTGTTTGGGCCGGGCAGGGATGATCAAAGTCGATAATCCTTTACC
CGCTTACCATGCTGGTTTGAGCTACTTGGCTTTGGGCAACCACGACTATGCCAAGAGAAGCTTTAACGCCAGTCTACGTT
GGTGTGAAGGCCACCCAGAGAGCACTGGGATCGCCGCCAGAGCACAGCGCGGACTGGCCACACTCGCGAAGGAGAATTCC
CATGTCAATTAA

Upstream 100 bases:

>100_bases
CTGCAACTGCAAAAAATGATGCAGACCTATAACGTGACCGTCAGTTTACTCAATAGCATGCAGACCATGTTGGCCGAGAT
GAATAAATCTATCGCCCAAA

Downstream 100 bases:

>100_bases
CAGTGTATTGGAAAGAAGTCCTGAGAATGTGTCGGCCAATTATGTTACCGCTCAGGCGCATGCTGTTAGCAAAGCAAGTT
TGCCCGACTGGTCCATGCCT

Product: type III secretion low calcium response chaperone LcrH/SycD

Products: NA

Alternate protein names: Type III Secretion System Chaperone SycD Family; Type III Secretion Low Calcium Response Chaperone; Type III Secretion System CesD Protein; Type III Secretion Chaperone

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSAKESVMKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIFYLLMRIDQWNYDYCFSLGIC
CQQLHEHEEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGNHDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENS
HVN

Sequences:

>Translated_163_residues
MSAKESVMKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIFYLLMRIDQWNYDYCFSLGIC
CQQLHEHEEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGNHDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENS
HVN
>Mature_162_residues
SAKESVMKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIFYLLMRIDQWNYDYCFSLGICC
QQLHEHEEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGNHDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENSH
VN

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18575; Mature: 18444

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKESVMKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIF
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
YLLMRIDQWNYDYCFSLGICCQQLHEHEEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCCHHHCCCCEEEECC
HDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENSHVN
CHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SAKESVMKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIF
CHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
YLLMRIDQWNYDYCFSLGICCQQLHEHEEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCCHHHCCCCEEEECC
HDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENSHVN
CHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA