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The map label for this gene is sseC [H]

Identifier: 126174176

GI number: 126174176

Start: 2267090

End: 2268544

Strand: Direct

Name: sseC [H]

Synonym: Sbal_1952

Alternate gene names: 126174176

Gene position: 2267090-2268544 (Clockwise)

Preceding gene: 126174175

Following gene: 126174177

Centisome position: 44.22

GC content: 49.0

Gene sequence:

>1455_bases
ATGTCAATTAACAGTGTATTGGAAAGAAGTCCTGAGAATGTGTCGGCCAATTATGTTACCGCTCAGGCGCATGCTGTTAG
CAAAGCAAGTTTGCCCGACTGGTCCATGCCTGTGCAGCTCACTCAAACTGAGCATACAGATCAGCATCAAGGTCCAGTCA
CAATGAAAGATGCGCAAAGGGCATTGCAGCGTATTTTAACGCCCTTTTTTACCCCAGACCCTAAAACGGGCGCTGTTGGT
GGATTGGGATCATTAAATTCATTAGAAAAAGCGTCCATGGATTCCATGGTCATGATGGCTGCGAATCTCAGCATTTCGAC
CTTCGCAGACACAGCAAGCTCGGCCATGAAAGCCAGCAAGATAATGACAGATACCCAAGAGTTCCTGCGCGATAAAAAAG
TGAAGGAGTATCAAGAGCAACTGGCGAAAGCCATCGAGCAAGCTGACAAGGCCCACAAGGGGGGGATTTTCGGTGCCATC
TTCGATTGGATTGTCGGTGCAGTCGAAGCTATTTACGGTGCCATCAAGTTGGTCGAGGGAGCCTTACGCTGCGCGGTTGG
CGATGTAGCGGGGGGCGCATTAGAAATCGCCGGTGGTGCAGCCTATCTCGCCGCAGGGGTCGCAGGCATGGTTAAAGCCG
CGGCTGAAACCGCCATCTTATGCGGGGCTGACAAAGAGAAATGCCAGAGCGTAATTGATGTGGCGGGCAAAGTGCAACTA
AGTTGCGAAATTGTGGGCATGGCACTGGATATCTTCCAAGCGGGGCGGGCAATTTCAGCGACACGTTCTATTGCTAAAGG
CACAGAAACTGCGATGAAAGAAGCGGCTCCTAAACTCGTTGATGGCATTACTAAAGGTTCTTCCGAGGCGATCACTAATG
TCGCGAAAGAAGTGGGTAAGCAAGTTGCCGAACAAGTTACTGATCAAGTAATGGCTAACTTAGGAAAAGGCTTAAAAGAA
GCGGCTGAACAGGGGGGGCGTAAACTTGCCAGCGGTCTGATGGATGCCTTCAGTAAAGAGGCGATTGAGCAACTCGTGAC
TCGCTCTGTCGAAGAAGTTGGCAAACAAGCCATTAAGAAAGGCGTGCTTGTCACCGCTGAGGAAATCACTAAGCAAGTGG
TGAAAGAGGTGAGCCATGAAGTGATTAAAACGGCAATCAAAGCATGTACTTTTACAACCCTAGATGTGATCCGTGCGACC
GCAGGTGCAGGAAAAGCCATTACCGATGGCAGCATCGCCGTTGAGAAAGCCAAACTGCAAAGGCAAATTGAAGAACTGAT
TTTAAAACAGAATTTCTTAGAGTTTTGCTACGAGTGGTACGACAAAGCTAAAGAGCAGCAAATGAAAACGGTAAAAGATC
TGATTGAAAAACAAGGCGACAGCTTAGACGGTGCCAGTAAGGCCATCAGTCAGAGTGGCGCACTACAAGCCCGTATCGCA
GGTTCAACAGTATAA

Upstream 100 bases:

>100_bases
TTTAACGCCAGTCTACGTTGGTGTGAAGGCCACCCAGAGAGCACTGGGATCGCCGCCAGAGCACAGCGCGGACTGGCCAC
ACTCGCGAAGGAGAATTCCC

Downstream 100 bases:

>100_bases
GTGAGGTTTACCATGACAGACATCAATATTATTTCGGGCCAAGGCCACACTCCTGCGCCCGTTAACACAGATAAGACAGA
TCAACTGAATGACAACTGTG

Product: secretion system effector

Products: NA

Alternate protein names: Secretion system effector C [H]

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MSINSVLERSPENVSANYVTAQAHAVSKASLPDWSMPVQLTQTEHTDQHQGPVTMKDAQRALQRILTPFFTPDPKTGAVG
GLGSLNSLEKASMDSMVMMAANLSISTFADTASSAMKASKIMTDTQEFLRDKKVKEYQEQLAKAIEQADKAHKGGIFGAI
FDWIVGAVEAIYGAIKLVEGALRCAVGDVAGGALEIAGGAAYLAAGVAGMVKAAAETAILCGADKEKCQSVIDVAGKVQL
SCEIVGMALDIFQAGRAISATRSIAKGTETAMKEAAPKLVDGITKGSSEAITNVAKEVGKQVAEQVTDQVMANLGKGLKE
AAEQGGRKLASGLMDAFSKEAIEQLVTRSVEEVGKQAIKKGVLVTAEEITKQVVKEVSHEVIKTAIKACTFTTLDVIRAT
AGAGKAITDGSIAVEKAKLQRQIEELILKQNFLEFCYEWYDKAKEQQMKTVKDLIEKQGDSLDGASKAISQSGALQARIA
GSTV

Sequences:

>Translated_484_residues
MSINSVLERSPENVSANYVTAQAHAVSKASLPDWSMPVQLTQTEHTDQHQGPVTMKDAQRALQRILTPFFTPDPKTGAVG
GLGSLNSLEKASMDSMVMMAANLSISTFADTASSAMKASKIMTDTQEFLRDKKVKEYQEQLAKAIEQADKAHKGGIFGAI
FDWIVGAVEAIYGAIKLVEGALRCAVGDVAGGALEIAGGAAYLAAGVAGMVKAAAETAILCGADKEKCQSVIDVAGKVQL
SCEIVGMALDIFQAGRAISATRSIAKGTETAMKEAAPKLVDGITKGSSEAITNVAKEVGKQVAEQVTDQVMANLGKGLKE
AAEQGGRKLASGLMDAFSKEAIEQLVTRSVEEVGKQAIKKGVLVTAEEITKQVVKEVSHEVIKTAIKACTFTTLDVIRAT
AGAGKAITDGSIAVEKAKLQRQIEELILKQNFLEFCYEWYDKAKEQQMKTVKDLIEKQGDSLDGASKAISQSGALQARIA
GSTV
>Mature_483_residues
SINSVLERSPENVSANYVTAQAHAVSKASLPDWSMPVQLTQTEHTDQHQGPVTMKDAQRALQRILTPFFTPDPKTGAVGG
LGSLNSLEKASMDSMVMMAANLSISTFADTASSAMKASKIMTDTQEFLRDKKVKEYQEQLAKAIEQADKAHKGGIFGAIF
DWIVGAVEAIYGAIKLVEGALRCAVGDVAGGALEIAGGAAYLAAGVAGMVKAAAETAILCGADKEKCQSVIDVAGKVQLS
CEIVGMALDIFQAGRAISATRSIAKGTETAMKEAAPKLVDGITKGSSEAITNVAKEVGKQVAEQVTDQVMANLGKGLKEA
AEQGGRKLASGLMDAFSKEAIEQLVTRSVEEVGKQAIKKGVLVTAEEITKQVVKEVSHEVIKTAIKACTFTTLDVIRATA
GAGKAITDGSIAVEKAKLQRQIEELILKQNFLEFCYEWYDKAKEQQMKTVKDLIEKQGDSLDGASKAISQSGALQARIAG
STV

Specific function: Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. May act as a translocator that mediates translocation of SPI-2 TTSS effector proteins from intraphagosomal bacterial cells into the host cells [H]

COG id: COG5613

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Secreted. Cell surface. Note=Secreted via type III secretion system 2 (SPI-2 TTSS). After secretion, localizes mainly on the surface of the bacterial cell [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006972 [H]

Pfam domain/function: PF04888 SseC [H]

EC number: NA

Molecular weight: Translated: 51103; Mature: 50972

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINSVLERSPENVSANYVTAQAHAVSKASLPDWSMPVQLTQTEHTDQHQGPVTMKDAQR
CCHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHH
ALQRILTPFFTPDPKTGAVGGLGSLNSLEKASMDSMVMMAANLSISTFADTASSAMKASK
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IMTDTQEFLRDKKVKEYQEQLAKAIEQADKAHKGGIFGAIFDWIVGAVEAIYGAIKLVEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALRCAVGDVAGGALEIAGGAAYLAAGVAGMVKAAAETAILCGADKEKCQSVIDVAGKVQL
HHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEE
SCEIVGMALDIFQAGRAISATRSIAKGTETAMKEAAPKLVDGITKGSSEAITNVAKEVGK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QVAEQVTDQVMANLGKGLKEAAEQGGRKLASGLMDAFSKEAIEQLVTRSVEEVGKQAIKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVLVTAEEITKQVVKEVSHEVIKTAIKACTFTTLDVIRATAGAGKAITDGSIAVEKAKLQ
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
RQIEELILKQNFLEFCYEWYDKAKEQQMKTVKDLIEKQGDSLDGASKAISQSGALQARIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEECC
GSTV
CCCC
>Mature Secondary Structure 
SINSVLERSPENVSANYVTAQAHAVSKASLPDWSMPVQLTQTEHTDQHQGPVTMKDAQR
CHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHH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CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9786193; 9786194; 11677609 [H]