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The map label for this gene is cydA [H]

Identifier: 125624652

GI number: 125624652

Start: 1844146

End: 1845621

Strand: Reverse

Name: cydA [H]

Synonym: llmg_1864

Alternate gene names: 125624652

Gene position: 1845621-1844146 (Counterclockwise)

Preceding gene: 125624653

Following gene: 125624651

Centisome position: 72.96

GC content: 38.89

Gene sequence:

>1476_bases
ATGCTAACCATTGAAAATCTCGCACGCTTTCAGTTTGCGATGACTACAATCTTCCACTTTTTCTTTGTACCGCTTTCTGT
CGGAATGGTTCTCATGACGGCAATCATGGAGACAATCTATGTAAAAACTGGTGATGAAAAATGGAAAAAACGCACGAAAT
TTTTTGGATCTATTATGCTCTTATCCTTTGCAGTAGGGGTAGTAACCGGTATTATTCAAGAATTTCAATTTGGAATGAAC
TGGTCGGAATATTCTCGTTACGTTGGGGATATTTTTGGCGCGCCTTTGGCTGTTGAAGCCCTTCTGGCCTTCTTTTTGGA
ATCTACCTTCCTTGGAGTCTGGATGTTCGGTTGGGATAAGTTAGGAAAGAAACTGCATAATGCAACGCTATGGATTGTAT
TTGTTGGGACTTTCTTGTCTTCACTTTGGATTTTGGCAGCAAACTCATGGATGCAAAATCCAGTGGGTTATGAAGTAAAA
GGTGGACGAGCAACCTTAACAAGTTTCTCGGCTCTTTTGACAAATCCTCAAACAATTTTAGAATTTAGTCACGTGGCAAC
AGGATTCCTCGTAACTGGTGGTTTTGTTGTTGCTGGGATTGCAGCTTATCAAATTCTTAAAAATCGAGAAATTGATATGT
TTAAACCAGTTTTGCGTTTAGGACTTTTGGTTGCTTTAATTGGTGCCGTAGGTAACTTTGTAGCTGGTGACCAACAAATG
ATTGAAGTTAAAAATTCTCAACCTATGAAATTTGCTGCAACTGAAGGTGTCTATGAAACGACTCCTGACCCTGCGGCTTG
GGATATGGTTGCTTTCTTTAATGAAGCTGACCATAAAGAAGTGTTTGGAATTCAAATTCCTTATATGCTTTCAATTCTGA
CTTATCACCGTCCTAGTGGTTCTGTTGAAGGGATGAATGAAATTAATGCTCAACTTCAGAAGAAATATCCTGATGTAGCT
AAAGAAATTGGAGGGAATTTCTTCCCACCAGTGACTGTACTTTTCTGGACTTTCCGGATTATGGCCGGTCTGTCAATGTT
AATGATTCTACTTTCGGCACTGGGTCTCTTTTGGACAAGGAAGAAAAAACCAAGTCTATATAAAAATAAATTTGGTTTGC
AAGTGTATCGTTGGATGTTATTTGCACCATTTCTTGCGATTACCTCAGGTTGGTTAGTGACCGAACTTGGACGCTATCCT
TGGACGGTGTATGGATTGTTCACGATGAAGGATTCAGTTTCACCAAATGTTTCTGTAGGTTCACTCTTGTTCTCAAACAT
CGTCTATTTCTTCCTTTTCTGCTTCCTTGGGGCTGTGATGGTCTACTTTACTCTTCAACGAATGAGAGAAGGAGTAGAAG
GTGCGGAAACAGCTTATGTTTCTTTAGATTCATTTAGTCAAGAAAATTTTGATTCTTCATCTAAAGAAGAAAATGAAATT
CAAAAAGAAACTAAAGAGAAAGGAGTGGATGAATAA

Upstream 100 bases:

>100_bases
TAGACTTGAAATGAAACTCGTCTAATAGCATAAAATATTTTTTTAAGTAAGTCTATATCTATTTGATATATATAGTAAAT
AAAAAATAAGGAGATAAACA

Downstream 100 bases:

>100_bases
TGACTGGATTACAACTTTTTTGGTTTATTATTGTTGGAGTATTATTTAGTGGCTTTTTCTTCCTTGAAGGTTTTGACTAC
GGAGTAGGAATGAGTGCAAT

Product: cytochrome bd-I ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MLTIENLARFQFAMTTIFHFFFVPLSVGMVLMTAIMETIYVKTGDEKWKKRTKFFGSIMLLSFAVGVVTGIIQEFQFGMN
WSEYSRYVGDIFGAPLAVEALLAFFLESTFLGVWMFGWDKLGKKLHNATLWIVFVGTFLSSLWILAANSWMQNPVGYEVK
GGRATLTSFSALLTNPQTILEFSHVATGFLVTGGFVVAGIAAYQILKNREIDMFKPVLRLGLLVALIGAVGNFVAGDQQM
IEVKNSQPMKFAATEGVYETTPDPAAWDMVAFFNEADHKEVFGIQIPYMLSILTYHRPSGSVEGMNEINAQLQKKYPDVA
KEIGGNFFPPVTVLFWTFRIMAGLSMLMILLSALGLFWTRKKKPSLYKNKFGLQVYRWMLFAPFLAITSGWLVTELGRYP
WTVYGLFTMKDSVSPNVSVGSLLFSNIVYFFLFCFLGAVMVYFTLQRMREGVEGAETAYVSLDSFSQENFDSSSKEENEI
QKETKEKGVDE

Sequences:

>Translated_491_residues
MLTIENLARFQFAMTTIFHFFFVPLSVGMVLMTAIMETIYVKTGDEKWKKRTKFFGSIMLLSFAVGVVTGIIQEFQFGMN
WSEYSRYVGDIFGAPLAVEALLAFFLESTFLGVWMFGWDKLGKKLHNATLWIVFVGTFLSSLWILAANSWMQNPVGYEVK
GGRATLTSFSALLTNPQTILEFSHVATGFLVTGGFVVAGIAAYQILKNREIDMFKPVLRLGLLVALIGAVGNFVAGDQQM
IEVKNSQPMKFAATEGVYETTPDPAAWDMVAFFNEADHKEVFGIQIPYMLSILTYHRPSGSVEGMNEINAQLQKKYPDVA
KEIGGNFFPPVTVLFWTFRIMAGLSMLMILLSALGLFWTRKKKPSLYKNKFGLQVYRWMLFAPFLAITSGWLVTELGRYP
WTVYGLFTMKDSVSPNVSVGSLLFSNIVYFFLFCFLGAVMVYFTLQRMREGVEGAETAYVSLDSFSQENFDSSSKEENEI
QKETKEKGVDE
>Mature_491_residues
MLTIENLARFQFAMTTIFHFFFVPLSVGMVLMTAIMETIYVKTGDEKWKKRTKFFGSIMLLSFAVGVVTGIIQEFQFGMN
WSEYSRYVGDIFGAPLAVEALLAFFLESTFLGVWMFGWDKLGKKLHNATLWIVFVGTFLSSLWILAANSWMQNPVGYEVK
GGRATLTSFSALLTNPQTILEFSHVATGFLVTGGFVVAGIAAYQILKNREIDMFKPVLRLGLLVALIGAVGNFVAGDQQM
IEVKNSQPMKFAATEGVYETTPDPAAWDMVAFFNEADHKEVFGIQIPYMLSILTYHRPSGSVEGMNEINAQLQKKYPDVA
KEIGGNFFPPVTVLFWTFRIMAGLSMLMILLSALGLFWTRKKKPSLYKNKFGLQVYRWMLFAPFLAITSGWLVTELGRYP
WTVYGLFTMKDSVSPNVSVGSLLFSNIVYFFLFCFLGAVMVYFTLQRMREGVEGAETAYVSLDSFSQENFDSSSKEENEI
QKETKEKGVDE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=517, Percent_Identity=35.5899419729207, Blast_Score=299, Evalue=3e-82,
Organism=Escherichia coli, GI1787212, Length=509, Percent_Identity=34.7740667976424, Blast_Score=297, Evalue=8e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 55315; Mature: 55315

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCC
>Mature Secondary Structure
MLTIENLARFQFAMTTIFHFFFVPLSVGMVLMTAIMETIYVKTGDEKWKKRTKFFGSIML
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LSFAVGVVTGIIQEFQFGMNWSEYSRYVGDIFGAPLAVEALLAFFLESTFLGVWMFGWDK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKKLHNATLWIVFVGTFLSSLWILAANSWMQNPVGYEVKGGRATLTSFSALLTNPQTIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCHHHHH
EFSHVATGFLVTGGFVVAGIAAYQILKNREIDMFKPVLRLGLLVALIGAVGNFVAGDQQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IEVKNSQPMKFAATEGVYETTPDPAAWDMVAFFNEADHKEVFGIQIPYMLSILTYHRPSG
EEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCCC
SVEGMNEINAQLQKKYPDVAKEIGGNFFPPVTVLFWTFRIMAGLSMLMILLSALGLFWTR
CCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KKKPSLYKNKFGLQVYRWMLFAPFLAITSGWLVTELGRYPWTVYGLFTMKDSVSPNVSVG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEECCCCCCCCHHH
SLLFSNIVYFFLFCFLGAVMVYFTLQRMREGVEGAETAYVSLDSFSQENFDSSSKEENEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCCCCHHHHH
QKETKEKGVDE
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]