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The map label for this gene is cydB [H]

Identifier: 125624651

GI number: 125624651

Start: 1843151

End: 1844146

Strand: Reverse

Name: cydB [H]

Synonym: llmg_1863

Alternate gene names: 125624651

Gene position: 1844146-1843151 (Counterclockwise)

Preceding gene: 125624652

Following gene: 125624650

Centisome position: 72.91

GC content: 37.55

Gene sequence:

>996_bases
ATGACTGGATTACAACTTTTTTGGTTTATTATTGTTGGAGTATTATTTAGTGGCTTTTTCTTCCTTGAAGGTTTTGACTA
CGGAGTAGGAATGAGTGCAATTACGGTTGCAAAGGATAAACGCGAAGTCGAGCAAGCTATTGGATCAATTGGTCCAGTTT
GGGACTTGAATGAAGTTTGGCTTTTGACAGCCGGTGGAGCAATGTTTGCTTCATTTCCTTATTGGTATGCCTCTTTATTC
TCAGGTTTCTATCTGATTCTATTCTTAATTTTGGTAGGTTTGATTTTCCGGGGAGTAACCTTTGAGTTTCGTCACCACTC
ACACACAGAAAAAGGAAAAATGATTTGGACCAAAGTCTTAGGAGTAGCTAGCTTTGCAATCCCATTTCTCTTTGGTTTGA
TGTTTACGGGTATGATTCAAGGCGTTCCAATGGATGCTAAAGGAAATGTAACTGCGACTTTTACCACTTATGTAAACTTC
TTGTCAGTTGTGGGTGGTGTTGCCGTAATGCTCTTGGCTTGGCTTCATGGTTTAAACTATTTAGCTTTGAAAACAGAAGG
AGATTTGCGTAAAAGAGCTGCAAAAATAGCAAACTTCCTCTACTTTGTCCTCTATGCTGGAGAAGTAGTTTTTGCAATCT
TACTGGCCGTCTTCACTGATTTCTTTGAAAAACATTTCATTGGAACTTTGCTTTTACTTGCTTTGATTGTGATTTTGACT
CTTGTCGCTCATTTATCTGTTCGTTCAGGTAAAGAAATGTCAGCTTTCTTGGCGTCAGGATTGACTTTCATCGCTTTAGT
TGCTCTAATCTTCCAAGGAATCTTCCCACGAGTGATGATTGCAACCAATCCTGCTCATAGTATTTTGATAAAAAATGCTA
GTTCAACAGGTTATACTTTGAAAACAATGACAATCATTACCTTAGCAATCTTGCCTTTTGTTCTTATTTACATGGGCTGG
ACCTATTATATTTTCAGAAAAAGAATACAAAAATAA

Upstream 100 bases:

>100_bases
ATGTTTCTTTAGATTCATTTAGTCAAGAAAATTTTGATTCTTCATCTAAAGAAGAAAATGAAATTCAAAAAGAAACTAAA
GAGAAAGGAGTGGATGAATA

Downstream 100 bases:

>100_bases
ATTATGAGAATAACTGGTTAAGCCAGTTATTTTCAGATTAGTTTTTTAATTGATATAATTAATTAGAGGTAACCATTTAT
TCTGGTCAGAAAATTTTTCT

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MTGLQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITVAKDKREVEQAIGSIGPVWDLNEVWLLTAGGAMFASFPYWYASLF
SGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMIWTKVLGVASFAIPFLFGLMFTGMIQGVPMDAKGNVTATFTTYVNF
LSVVGGVAVMLLAWLHGLNYLALKTEGDLRKRAAKIANFLYFVLYAGEVVFAILLAVFTDFFEKHFIGTLLLLALIVILT
LVAHLSVRSGKEMSAFLASGLTFIALVALIFQGIFPRVMIATNPAHSILIKNASSTGYTLKTMTIITLAILPFVLIYMGW
TYYIFRKRIQK

Sequences:

>Translated_331_residues
MTGLQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITVAKDKREVEQAIGSIGPVWDLNEVWLLTAGGAMFASFPYWYASLF
SGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMIWTKVLGVASFAIPFLFGLMFTGMIQGVPMDAKGNVTATFTTYVNF
LSVVGGVAVMLLAWLHGLNYLALKTEGDLRKRAAKIANFLYFVLYAGEVVFAILLAVFTDFFEKHFIGTLLLLALIVILT
LVAHLSVRSGKEMSAFLASGLTFIALVALIFQGIFPRVMIATNPAHSILIKNASSTGYTLKTMTIITLAILPFVLIYMGW
TYYIFRKRIQK
>Mature_330_residues
TGLQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITVAKDKREVEQAIGSIGPVWDLNEVWLLTAGGAMFASFPYWYASLFS
GFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMIWTKVLGVASFAIPFLFGLMFTGMIQGVPMDAKGNVTATFTTYVNFL
SVVGGVAVMLLAWLHGLNYLALKTEGDLRKRAAKIANFLYFVLYAGEVVFAILLAVFTDFFEKHFIGTLLLLALIVILTL
VAHLSVRSGKEMSAFLASGLTFIALVALIFQGIFPRVMIATNPAHSILIKNASSTGYTLKTMTIITLAILPFVLIYMGWT
YYIFRKRIQK

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=362, Percent_Identity=32.0441988950276, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787213, Length=364, Percent_Identity=29.6703296703297, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36847; Mature: 36715

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGLQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITVAKDKREVEQAIGSIGPVWDLNEVW
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
LLTAGGAMFASFPYWYASLFSGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMIWTKVL
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHH
GVASFAIPFLFGLMFTGMIQGVPMDAKGNVTATFTTYVNFLSVVGGVAVMLLAWLHGLNY
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LALKTEGDLRKRAAKIANFLYFVLYAGEVVFAILLAVFTDFFEKHFIGTLLLLALIVILT
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAHLSVRSGKEMSAFLASGLTFIALVALIFQGIFPRVMIATNPAHSILIKNASSTGYTL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCHH
KTMTIITLAILPFVLIYMGWTYYIFRKRIQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]