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The map label for this gene is ymdC [H]

Identifier: 125624115

GI number: 125624115

Start: 1262971

End: 1263759

Strand: Reverse

Name: ymdC [H]

Synonym: llmg_1293

Alternate gene names: 125624115

Gene position: 1263759-1262971 (Counterclockwise)

Preceding gene: 125624116

Following gene: 125624114

Centisome position: 49.96

GC content: 32.57

Gene sequence:

>789_bases
GTGAGCGAGTTAAAAGAGTTATACATTAACATTGAGGAATTCCCTGAAAAACTTCAGAATACGTTAAAAGATGCAAAAGT
TTATGATAGCAGTTCATCTCCTGAAGCCCAAGTGTTGTTCATTGATAAGAAAGACGGTTATTATTTAAAGATAGCTTCAA
AAAAATCATTAGAGCGAGAAGCTGAAATGACAGACTATTTTAAAAAGAAAAATTTAGGCTTAGGATATATTTCTTATTTA
TCAGACCAGTCACAAGATTTTCTGCTCAAAGAAAAAATACAAGGAGACAATTATCTAGCAAAGCAGTATCTCAAAAATCC
AAAACAACTATGTGATAGCCTTGCTGAAAATCTACGATTCCTTCATGAACAGAATTTTGAAGATTGTCCGATTTTAGACC
ATTCTGAACGTTATCTGAAAAAAGTTGAAAATAATGCAAGACTAAAGAAATCAAATCTAGATTTTGTAACTAACTATAAT
ATTCATACACCCGAAGAAACTTATGATTATATACAAAACAATAAACTATTATTAAAGGATGATACGCTTTTACATGGAGA
TTACTGTCTACCTAATATCATTTTAGATAATTGGCAATTTAAAGGCTTTATCGATTTGGATTGTGCAGGTGTTGGTGACC
GACATATTGACCTCTTTTGGGGAGCATGGACGCTCAATTTCAACATTGGGACTGACCAATATCGTGATCGCTTCTTTGAT
GCCTATGGTCGGGATAATATTAATATTGACCGATTGAAATTAATTGGCTGTTGTGAGGTTTTTGGATAA

Upstream 100 bases:

>100_bases
TCATTGAAGGAATCTTTAAATCTATGGCACGTGCCCTTAAACAAGCGATAAGTATTGATGAGACTAAAGTTGGAAAAATA
CCAAGCAGTAAAGGAGTTTT

Downstream 100 bases:

>100_bases
TTTTAAATATAAATAGGAATTTATTTCCATTTACTATTGAAAGGAGAAGTATGGCAAATATTGTTATCATCGACTACAAC
CTTGGAAATCTTCAAAGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: Kanamycin kinase [H]

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSELKELYINIEEFPEKLQNTLKDAKVYDSSSSPEAQVLFIDKKDGYYLKIASKKSLEREAEMTDYFKKKNLGLGYISYL
SDQSQDFLLKEKIQGDNYLAKQYLKNPKQLCDSLAENLRFLHEQNFEDCPILDHSERYLKKVENNARLKKSNLDFVTNYN
IHTPEETYDYIQNNKLLLKDDTLLHGDYCLPNIILDNWQFKGFIDLDCAGVGDRHIDLFWGAWTLNFNIGTDQYRDRFFD
AYGRDNINIDRLKLIGCCEVFG

Sequences:

>Translated_262_residues
MSELKELYINIEEFPEKLQNTLKDAKVYDSSSSPEAQVLFIDKKDGYYLKIASKKSLEREAEMTDYFKKKNLGLGYISYL
SDQSQDFLLKEKIQGDNYLAKQYLKNPKQLCDSLAENLRFLHEQNFEDCPILDHSERYLKKVENNARLKKSNLDFVTNYN
IHTPEETYDYIQNNKLLLKDDTLLHGDYCLPNIILDNWQFKGFIDLDCAGVGDRHIDLFWGAWTLNFNIGTDQYRDRFFD
AYGRDNINIDRLKLIGCCEVFG
>Mature_261_residues
SELKELYINIEEFPEKLQNTLKDAKVYDSSSSPEAQVLFIDKKDGYYLKIASKKSLEREAEMTDYFKKKNLGLGYISYLS
DQSQDFLLKEKIQGDNYLAKQYLKNPKQLCDSLAENLRFLHEQNFEDCPILDHSERYLKKVENNARLKKSNLDFVTNYNI
HTPEETYDYIQNNKLLLKDDTLLHGDYCLPNIILDNWQFKGFIDLDCAGVGDRHIDLFWGAWTLNFNIGTDQYRDRFFDA
YGRDNINIDRLKLIGCCEVFG

Specific function: Unknown

COG id: COG3231

COG function: function code J; Aminoglycoside phosphotransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aminoglycoside phosphotransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002575
- InterPro:   IPR011009 [H]

Pfam domain/function: PF01636 APH [H]

EC number: =2.7.1.95 [H]

Molecular weight: Translated: 30775; Mature: 30644

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00109 PROTEIN_KINASE_TYR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELKELYINIEEFPEKLQNTLKDAKVYDSSSSPEAQVLFIDKKDGYYLKIASKKSLERE
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEECCCCEEEEEECCHHHHHH
AEMTDYFKKKNLGLGYISYLSDQSQDFLLKEKIQGDNYLAKQYLKNPKQLCDSLAENLRF
HHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH
LHEQNFEDCPILDHSERYLKKVENNARLKKSNLDFVTNYNIHTPEETYDYIQNNKLLLKD
HHHCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEECCCCCCHHHHHHHHCCEEEEEC
DTLLHGDYCLPNIILDNWQFKGFIDLDCAGVGDRHIDLFWGAWTLNFNIGTDQYRDRFFD
CCEEECCCCCCCEEECCEEECEEEEEEECCCCCCEEEEEEEEEEEEEECCCHHHHHHHHH
AYGRDNINIDRLKLIGCCEVFG
HCCCCCCCHHHEEEEEEHHHCC
>Mature Secondary Structure 
SELKELYINIEEFPEKLQNTLKDAKVYDSSSSPEAQVLFIDKKDGYYLKIASKKSLERE
CCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEECCCCEEEEEECCHHHHHH
AEMTDYFKKKNLGLGYISYLSDQSQDFLLKEKIQGDNYLAKQYLKNPKQLCDSLAENLRF
HHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH
LHEQNFEDCPILDHSERYLKKVENNARLKKSNLDFVTNYNIHTPEETYDYIQNNKLLLKD
HHHCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEECCCCCCHHHHHHHHCCEEEEEC
DTLLHGDYCLPNIILDNWQFKGFIDLDCAGVGDRHIDLFWGAWTLNFNIGTDQYRDRFFD
CCEEECCCCCCCEEECCEEECEEEEEEECCCCCCEEEEEEEEEEEEEECCCHHHHHHHHH
AYGRDNINIDRLKLIGCCEVFG
HCCCCCCCHHHEEEEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1400209; 11337471 [H]