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The map label for this gene is nupC [H]

Identifier: 125623952

GI number: 125623952

Start: 1082012

End: 1082965

Strand: Reverse

Name: nupC [H]

Synonym: llmg_1121

Alternate gene names: 125623952

Gene position: 1082965-1082012 (Counterclockwise)

Preceding gene: 125623953

Following gene: 125623945

Centisome position: 42.81

GC content: 42.35

Gene sequence:

>954_bases
ATGAACGTCGTAAACACTTTACAGATTATTGTCGCTAATATGCTCATATATTCAACACCTCTAATCTTTACAAGTATTGG
TGGTGTCTTCTCCGAACGAGGCGGAATCGTCAATGTCGGTCTCGAAGGAATAATGACTATCGGGGCCTTTAGTTCCGTTG
TCTTCAACTTAACTACTGCCGGGATGTTTGGAAGCATGACTCCTTGGCTCTCAATCCTCTTTGGAGCTTTAATCGGTGCG
CTCTTCTCTTCTCTACACGCGGTTGCTACCGTAAACCTAAGAGCAGACCATATCGTATCTGGGACCGTACTTAACTTGAT
GGCTCCAGCACTTGGAGTATTCCTACTTCAAGTTTTCTACCAACAAGGTCAAATTAATATCAATGAACAAATTGGTTATT
GGAACGTTCCTTTACTTTCTAATATTCCTGTCATTGGTAAAATCTTCTTTACTCAAACTTCACTCCCAGGTTTCCTTGCA
ATAGTTGTTGCAATTCTCGCTTGGTACGTCCTATTTAAAACTCGCTTTGGTCTTCGCCTTCGTTCTGTTGGTGAAAATCC
TCAAGCAGCTGACACCCTTGGGATTAACGTTTATGCCTATCGTTGGGCTGGGGTACTTCTCTCTGGTGTTCTCGGAGGAG
TTGGTGGAGCAATCTATGCACAAGCAATTTCTGGTAACTTCTCAGTTTCAACTATTGCAGGACAAGGTTTCATTTCGCTT
GCAGCCATGATTTTTGGTAAATGGAATCCAATTGGAGCAATGCTATCATCACTTCTCTTTGGACTCTTTACTTCACTGGC
CGTTGTCGGTGGTCAAATCCCAGGAATCAAAGAAATCCCTTCTTCATTCCTACAAATGGCACCTTACGTCTTTACAATTA
TCGTCTTGGCACTCTTCCTTGGAAAAGCAATTGCGCCTAAAGCTGACGGGGTAAACTATATAAAATCCAAATAA

Upstream 100 bases:

>100_bases
TTATATTCTTCATCGCAGTGAAATTCATTATCGAAGTCATGCTACCAAAAGCTAAAGCAATCAAAGCTTCAGAAGCCACT
AAGAAGAAAGGAGAAAAAGC

Downstream 100 bases:

>100_bases
ATTTCTAAAAATAAAAAAGTCTGTCGATGAACAGACTTTTTTATTATAGTTTAAAGCAAACTTTTAAATATAATAAAAAG
AGTTAGTTGAAATTTTCTAC

Product: purine/cytidine ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MNVVNTLQIIVANMLIYSTPLIFTSIGGVFSERGGIVNVGLEGIMTIGAFSSVVFNLTTAGMFGSMTPWLSILFGALIGA
LFSSLHAVATVNLRADHIVSGTVLNLMAPALGVFLLQVFYQQGQININEQIGYWNVPLLSNIPVIGKIFFTQTSLPGFLA
IVVAILAWYVLFKTRFGLRLRSVGENPQAADTLGINVYAYRWAGVLLSGVLGGVGGAIYAQAISGNFSVSTIAGQGFISL
AAMIFGKWNPIGAMLSSLLFGLFTSLAVVGGQIPGIKEIPSSFLQMAPYVFTIIVLALFLGKAIAPKADGVNYIKSK

Sequences:

>Translated_317_residues
MNVVNTLQIIVANMLIYSTPLIFTSIGGVFSERGGIVNVGLEGIMTIGAFSSVVFNLTTAGMFGSMTPWLSILFGALIGA
LFSSLHAVATVNLRADHIVSGTVLNLMAPALGVFLLQVFYQQGQININEQIGYWNVPLLSNIPVIGKIFFTQTSLPGFLA
IVVAILAWYVLFKTRFGLRLRSVGENPQAADTLGINVYAYRWAGVLLSGVLGGVGGAIYAQAISGNFSVSTIAGQGFISL
AAMIFGKWNPIGAMLSSLLFGLFTSLAVVGGQIPGIKEIPSSFLQMAPYVFTIIVLALFLGKAIAPKADGVNYIKSK
>Mature_317_residues
MNVVNTLQIIVANMLIYSTPLIFTSIGGVFSERGGIVNVGLEGIMTIGAFSSVVFNLTTAGMFGSMTPWLSILFGALIGA
LFSSLHAVATVNLRADHIVSGTVLNLMAPALGVFLLQVFYQQGQININEQIGYWNVPLLSNIPVIGKIFFTQTSLPGFLA
IVVAILAWYVLFKTRFGLRLRSVGENPQAADTLGINVYAYRWAGVLLSGVLGGVGGAIYAQAISGNFSVSTIAGQGFISL
AAMIFGKWNPIGAMLSSLLFGLFTSLAVVGGQIPGIKEIPSSFLQMAPYVFTIIVLALFLGKAIAPKADGVNYIKSK

Specific function: Part of the binding-protein-dependent transport system. Probably responsible for the translocation of the substrates across the membrane [H]

COG id: COG1079

COG function: function code R; Uncharacterized ABC-type transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33552; Mature: 33552

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVVNTLQIIVANMLIYSTPLIFTSIGGVFSERGGIVNVGLEGIMTIGAFSSVVFNLTTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHH
GMFGSMTPWLSILFGALIGALFSSLHAVATVNLRADHIVSGTVLNLMAPALGVFLLQVFY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
QQGQININEQIGYWNVPLLSNIPVIGKIFFTQTSLPGFLAIVVAILAWYVLFKTRFGLRL
HCCCEEECCCCCEECCCHHHCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHH
RSVGENPQAADTLGINVYAYRWAGVLLSGVLGGVGGAIYAQAISGNFSVSTIAGQGFISL
HCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCHHHHH
AAMIFGKWNPIGAMLSSLLFGLFTSLAVVGGQIPGIKEIPSSFLQMAPYVFTIIVLALFL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GKAIAPKADGVNYIKSK
CHHCCCCCCCCHHHCCC
>Mature Secondary Structure
MNVVNTLQIIVANMLIYSTPLIFTSIGGVFSERGGIVNVGLEGIMTIGAFSSVVFNLTTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHH
GMFGSMTPWLSILFGALIGALFSSLHAVATVNLRADHIVSGTVLNLMAPALGVFLLQVFY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
QQGQININEQIGYWNVPLLSNIPVIGKIFFTQTSLPGFLAIVVAILAWYVLFKTRFGLRL
HCCCEEECCCCCEECCCHHHCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHH
RSVGENPQAADTLGINVYAYRWAGVLLSGVLGGVGGAIYAQAISGNFSVSTIAGQGFISL
HCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCHHHHH
AAMIFGKWNPIGAMLSSLLFGLFTSLAVVGGQIPGIKEIPSSFLQMAPYVFTIIVLALFL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GKAIAPKADGVNYIKSK
CHHCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]