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The map label for this gene is nupB [H]

Identifier: 125623953

GI number: 125623953

Start: 1082962

End: 1084056

Strand: Reverse

Name: nupB [H]

Synonym: llmg_1122

Alternate gene names: 125623953

Gene position: 1084056-1082962 (Counterclockwise)

Preceding gene: 125623954

Following gene: 125623952

Centisome position: 42.86

GC content: 39.36

Gene sequence:

>1095_bases
ATGAATAATAAAACAAGAAAAGTCCTCGTTCCTCTCATTGCCATTGTTTTTGGTTTCCTGTTAGGTGCGATTATCATGCT
AGCCTTTGGCTATAACCCGATTTGGGGTTACGAAGACCTTTTTATTTCTGCTTTAGGAAGTGCAAGATCCATTGGTGAAA
CCCTACAAACTATGGGACCTTTGATTTTGACTGCTTTATCCTTTGCCGTTGCCATGAAAGTCGGCCTTTTCAATATCGGG
ATGTCAGGTCAAGCACTAGCTGGTTGGATTAGTTCCATGTGGTTTGCTTTAAGTTTCCCAGATATCCCCCGCTTACTGAT
GATTCCTTTAGTTGTAATTATCGGAATGGTCTTTGGAGCATTTATGGGATTCATTCCCGGCATTCTTCGAGCTCTACTTG
GAACTTCAGAAGTTATCACAACAATTATGTTGAATTATATTATGTTGTTCTTCTCAACCTTTATGATTCATAGCATGTTC
CAAAAAAACATTTTGATGGATAATACTACTGACCAAACAAAATTAATTAGTGCAAATGCTTCATTTAGAACCAATTGGAT
GTCCTCATTAACAGATAATTCAACCTTGAATATCGGACTAATCATTGCAATAATTGCCCTTGTGATTATGGCCATTATCT
TCACTAAGACAACTCTTGGGTTTGAAATTAAAGCTGTTGGTTTAAATCCTGACGCTTCAGAATATGCCGGTATCTCAGCA
AAACGTACCCTTATCTTATCTATGGTTGTCGCCGGCGCCCTCGCTGGACTTGGTGGTGTTGTTTATGGATTTGGGTATAT
GCAAAACTTTGTCTCTCAATCGGCATCCCTTGATATCGGATTTTATGGCATGGCTGTTGCCCTTCTTGGTGGTAATAGTC
CTATCGGTATTCTCTTTGCCGCTCTTCTTTTCTCAGTTCTTCAAACAGGTGCACCTGGTATGACAAACGATGGTATTCCA
CCAGAAATCGTTAAAGTTGTCACTGCTGCAATTATATTCTTCATCGCAGTGAAATTCATTATCGAAGTCATGCTACCAAA
AGCTAAAGCAATCAAAGCTTCAGAAGCCACTAAGAAGAAAGGAGAAAAAGCATGA

Upstream 100 bases:

>100_bases
CGAATCGCTGTAATTCACGATGGTCAAATTCAGGGAATTGTAAGCCCTGAAACAACCACAAAACAAGAACTCGGTATTTT
AATGGTTGGAGGTAACATTA

Downstream 100 bases:

>100_bases
ACGTCGTAAACACTTTACAGATTATTGTCGCTAATATGCTCATATATTCAACACCTCTAATCTTTACAAGTATTGGTGGT
GTCTTCTCCGAACGAGGCGG

Product: purine/cytidine ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MNNKTRKVLVPLIAIVFGFLLGAIIMLAFGYNPIWGYEDLFISALGSARSIGETLQTMGPLILTALSFAVAMKVGLFNIG
MSGQALAGWISSMWFALSFPDIPRLLMIPLVVIIGMVFGAFMGFIPGILRALLGTSEVITTIMLNYIMLFFSTFMIHSMF
QKNILMDNTTDQTKLISANASFRTNWMSSLTDNSTLNIGLIIAIIALVIMAIIFTKTTLGFEIKAVGLNPDASEYAGISA
KRTLILSMVVAGALAGLGGVVYGFGYMQNFVSQSASLDIGFYGMAVALLGGNSPIGILFAALLFSVLQTGAPGMTNDGIP
PEIVKVVTAAIIFFIAVKFIIEVMLPKAKAIKASEATKKKGEKA

Sequences:

>Translated_364_residues
MNNKTRKVLVPLIAIVFGFLLGAIIMLAFGYNPIWGYEDLFISALGSARSIGETLQTMGPLILTALSFAVAMKVGLFNIG
MSGQALAGWISSMWFALSFPDIPRLLMIPLVVIIGMVFGAFMGFIPGILRALLGTSEVITTIMLNYIMLFFSTFMIHSMF
QKNILMDNTTDQTKLISANASFRTNWMSSLTDNSTLNIGLIIAIIALVIMAIIFTKTTLGFEIKAVGLNPDASEYAGISA
KRTLILSMVVAGALAGLGGVVYGFGYMQNFVSQSASLDIGFYGMAVALLGGNSPIGILFAALLFSVLQTGAPGMTNDGIP
PEIVKVVTAAIIFFIAVKFIIEVMLPKAKAIKASEATKKKGEKA
>Mature_364_residues
MNNKTRKVLVPLIAIVFGFLLGAIIMLAFGYNPIWGYEDLFISALGSARSIGETLQTMGPLILTALSFAVAMKVGLFNIG
MSGQALAGWISSMWFALSFPDIPRLLMIPLVVIIGMVFGAFMGFIPGILRALLGTSEVITTIMLNYIMLFFSTFMIHSMF
QKNILMDNTTDQTKLISANASFRTNWMSSLTDNSTLNIGLIIAIIALVIMAIIFTKTTLGFEIKAVGLNPDASEYAGISA
KRTLILSMVVAGALAGLGGVVYGFGYMQNFVSQSASLDIGFYGMAVALLGGNSPIGILFAALLFSVLQTGAPGMTNDGIP
PEIVKVVTAAIIFFIAVKFIIEVMLPKAKAIKASEATKKKGEKA

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4603

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851
- InterPro:   IPR002229 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 38876; Mature: 38876

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKTRKVLVPLIAIVFGFLLGAIIMLAFGYNPIWGYEDLFISALGSARSIGETLQTMGP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LILTALSFAVAMKVGLFNIGMSGQALAGWISSMWFALSFPDIPRLLMIPLVVIIGMVFGA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FMGFIPGILRALLGTSEVITTIMLNYIMLFFSTFMIHSMFQKNILMDNTTDQTKLISANA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
SFRTNWMSSLTDNSTLNIGLIIAIIALVIMAIIFTKTTLGFEIKAVGLNPDASEYAGISA
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHCCCHH
KRTLILSMVVAGALAGLGGVVYGFGYMQNFVSQSASLDIGFYGMAVALLGGNSPIGILFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH
ALLFSVLQTGAPGMTNDGIPPEIVKVVTAAIIFFIAVKFIIEVMLPKAKAIKASEATKKK
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
GEKA
CCCC
>Mature Secondary Structure
MNNKTRKVLVPLIAIVFGFLLGAIIMLAFGYNPIWGYEDLFISALGSARSIGETLQTMGP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LILTALSFAVAMKVGLFNIGMSGQALAGWISSMWFALSFPDIPRLLMIPLVVIIGMVFGA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FMGFIPGILRALLGTSEVITTIMLNYIMLFFSTFMIHSMFQKNILMDNTTDQTKLISANA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
SFRTNWMSSLTDNSTLNIGLIIAIIALVIMAIIFTKTTLGFEIKAVGLNPDASEYAGISA
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHCCCHH
KRTLILSMVVAGALAGLGGVVYGFGYMQNFVSQSASLDIGFYGMAVALLGGNSPIGILFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH
ALLFSVLQTGAPGMTNDGIPPEIVKVVTAAIIFFIAVKFIIEVMLPKAKAIKASEATKKK
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
GEKA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]