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The map label for this gene is rbsR [H]

Identifier: 125623635

GI number: 125623635

Start: 773097

End: 774080

Strand: Direct

Name: rbsR [H]

Synonym: llmg_0784

Alternate gene names: 125623635

Gene position: 773097-774080 (Clockwise)

Preceding gene: 125623634

Following gene: 125623636

Centisome position: 30.56

GC content: 35.57

Gene sequence:

>984_bases
ATGGCCACAATTAAACAAGTTGCACTTGAAGCAGGTCTTTCAAAGTCTACAGTTTCGCGTTTCATTGCTCAAAATGGGTA
TGTCAGTGATGAAGCCAGAAAGAAAATAGAAGAAGCGATAAAAAAATTAAATTTTACCCCTAACCTCTCTGCTCAGTCTT
TAAAAACAAAGAAGAATCAACTCGTTGGTTTGCTTTTGCCAGATATTTCCAATCCCTTCTTTCCCATGCTTGCAAAGGGG
GCAGAAGAATTTTTAAAAGAAAAAGGCTATCGAGTGATGCTTGGTAATATTGGTGAAAATCATCAATCAGAACATGATTA
CTTGAAAGTCCTCTTACAAAGTAATGCGGCAGGTATTATTTCAACTCATGATTTTAAAGAAGAATTTCCTGATTTGGATA
TTCCATCAGTCATTGTGGACCGAGTTGGACATAAAAGTAACTATGGTGTTTTTTCGGATAATGAATCAGGCGGACGCTTA
GCAGCAAAAGTTATTGTAGAGGCTGGAGCCAAAAATGTTGCTGTGGTTAGTGGCCCTTTGAATGCCACAAATATTAATAA
TCGTTTTAAAGCAAGTATTGCTTATTTAAAAGAAAAGAAAGTTGATTTTAAAGCCCTTTACAGTCAAAGTTATGATTTTG
AAGAAATCCAGAAAGAGGCGCGAGAAGTTCTTGCTAATAAGGAAAATTTTGATAGTATCATTGCACCGTCAGATATTCAC
GCCATGGCTTATATTCATGAAATCCATCGATTAGATAAGAAGATTCCTGAGGAAATTCAAATTATTGGTTATGATGATAT
ACAAATGAGCCAATTTATTTATCCAGCCCTTTCAACTATTCATCAATCTGCTTACCAAATGGGACTTGAAGCGGCTCAAC
TTATTTATAAAATAGCAACTGATCAGCCTATTGAGAAATCAAAGATTGAGCTACCTGTTCATTATGTAGCGCGTGAAACA
ATTCGACAAAAAGGAAAAGAATGA

Upstream 100 bases:

>100_bases
TATTAAAACGAAATATAAAAAGGATTGACAAAATAAATGAAAACGGATACAATCATACATGTAAATGTGAGAACGTTCCC
ACAATTGAAAGGAGGAAGCC

Downstream 100 bases:

>100_bases
GGAAAAATTAATGACAAAAGTAAGTGTTGTAGGAAGTATTTCCATGGATTTAGTGACAAGCACAAAAAGAGTTCCACAAG
CAGGTGAAACAGTTTTTGGA

Product: ribose operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MATIKQVALEAGLSKSTVSRFIAQNGYVSDEARKKIEEAIKKLNFTPNLSAQSLKTKKNQLVGLLLPDISNPFFPMLAKG
AEEFLKEKGYRVMLGNIGENHQSEHDYLKVLLQSNAAGIISTHDFKEEFPDLDIPSVIVDRVGHKSNYGVFSDNESGGRL
AAKVIVEAGAKNVAVVSGPLNATNINNRFKASIAYLKEKKVDFKALYSQSYDFEEIQKEAREVLANKENFDSIIAPSDIH
AMAYIHEIHRLDKKIPEEIQIIGYDDIQMSQFIYPALSTIHQSAYQMGLEAAQLIYKIATDQPIEKSKIELPVHYVARET
IRQKGKE

Sequences:

>Translated_327_residues
MATIKQVALEAGLSKSTVSRFIAQNGYVSDEARKKIEEAIKKLNFTPNLSAQSLKTKKNQLVGLLLPDISNPFFPMLAKG
AEEFLKEKGYRVMLGNIGENHQSEHDYLKVLLQSNAAGIISTHDFKEEFPDLDIPSVIVDRVGHKSNYGVFSDNESGGRL
AAKVIVEAGAKNVAVVSGPLNATNINNRFKASIAYLKEKKVDFKALYSQSYDFEEIQKEAREVLANKENFDSIIAPSDIH
AMAYIHEIHRLDKKIPEEIQIIGYDDIQMSQFIYPALSTIHQSAYQMGLEAAQLIYKIATDQPIEKSKIELPVHYVARET
IRQKGKE
>Mature_326_residues
ATIKQVALEAGLSKSTVSRFIAQNGYVSDEARKKIEEAIKKLNFTPNLSAQSLKTKKNQLVGLLLPDISNPFFPMLAKGA
EEFLKEKGYRVMLGNIGENHQSEHDYLKVLLQSNAAGIISTHDFKEEFPDLDIPSVIVDRVGHKSNYGVFSDNESGGRLA
AKVIVEAGAKNVAVVSGPLNATNINNRFKASIAYLKEKKVDFKALYSQSYDFEEIQKEAREVLANKENFDSIIAPSDIHA
MAYIHEIHRLDKKIPEEIQIIGYDDIQMSQFIYPALSTIHQSAYQMGLEAAQLIYKIATDQPIEKSKIELPVHYVARETI
RQKGKE

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=322, Percent_Identity=29.1925465838509, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787948, Length=334, Percent_Identity=25.748502994012, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1790369, Length=318, Percent_Identity=25.1572327044025, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1789202, Length=317, Percent_Identity=25.8675078864353, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789068, Length=298, Percent_Identity=24.8322147651007, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1788474, Length=306, Percent_Identity=25.8169934640523, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI48994940, Length=304, Percent_Identity=25.3289473684211, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787580, Length=319, Percent_Identity=25.0783699059561, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786540, Length=330, Percent_Identity=23.3333333333333, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1790715, Length=304, Percent_Identity=21.7105263157895, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787906, Length=229, Percent_Identity=25.3275109170306, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789456, Length=323, Percent_Identity=24.7678018575851, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786268, Length=287, Percent_Identity=21.602787456446, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36599; Mature: 36468

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIKQVALEAGLSKSTVSRFIAQNGYVSDEARKKIEEAIKKLNFTPNLSAQSLKTKKNQ
CCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LVGLLLPDISNPFFPMLAKGAEEFLKEKGYRVMLGNIGENHQSEHDYLKVLLQSNAAGII
EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEE
STHDFKEEFPDLDIPSVIVDRVGHKSNYGVFSDNESGGRLAAKVIVEAGAKNVAVVSGPL
ECCHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCC
NATNINNRFKASIAYLKEKKVDFKALYSQSYDFEEIQKEAREVLANKENFDSIIAPSDIH
CCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
AMAYIHEIHRLDKKIPEEIQIIGYDDIQMSQFIYPALSTIHQSAYQMGLEAAQLIYKIAT
HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DQPIEKSKIELPVHYVARETIRQKGKE
CCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATIKQVALEAGLSKSTVSRFIAQNGYVSDEARKKIEEAIKKLNFTPNLSAQSLKTKKNQ
CHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LVGLLLPDISNPFFPMLAKGAEEFLKEKGYRVMLGNIGENHQSEHDYLKVLLQSNAAGII
EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEE
STHDFKEEFPDLDIPSVIVDRVGHKSNYGVFSDNESGGRLAAKVIVEAGAKNVAVVSGPL
ECCHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCC
NATNINNRFKASIAYLKEKKVDFKALYSQSYDFEEIQKEAREVLANKENFDSIIAPSDIH
CCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
AMAYIHEIHRLDKKIPEEIQIIGYDDIQMSQFIYPALSTIHQSAYQMGLEAAQLIYKIAT
HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DQPIEKSKIELPVHYVARETIRQKGKE
CCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]