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The map label for this gene is mcrD [H]

Identifier: 124486379

GI number: 124486379

Start: 1597100

End: 1597573

Strand: Reverse

Name: mcrD [H]

Synonym: Mlab_1564

Alternate gene names: 124486379

Gene position: 1597573-1597100 (Counterclockwise)

Preceding gene: 124486380

Following gene: 124486378

Centisome position: 88.51

GC content: 48.73

Gene sequence:

>474_bases
ATGACAGAATCAACATACCCACAACTAAGAATCGTCCCCACGAGATTCCTGAATCCGGAGACCACCGAGATTCTTCTCGA
AAAAATCTACACAATAGATGGGATACGCCGCCTTGTGCTCAATGGTCCAAACCTTCCGGCTACCGTACCTTACGGTCCGG
CCAGAGGCACGGTCAATGATAACTCGCTCCGGCGCATCATTAAGGTCTGCGGTGAAGATTATCTTCTCCACGTTCAGGTC
GGTGCAATTCTTCTTGAATTGGAAGATGCTTCTGTGATTCCGCTTGTCAAGGCGGCATGCGATGAGGTCTTCGCTGACAA
ATTCCCGTATGGAATCACCGAAGGTACCTACATGCGGTCGAACATGACGACCACCGACTATGCCAAATACGGTATTGTCG
ATGATAAACGAATTCTCGGAATGAGCGATCCAAAAAGCAAGCAGCGCCCTATCATCCTTCAGGGAACTAAATAA

Upstream 100 bases:

>100_bases
AGACCTTCGGTCAGATCGACGAGTTTGCCCACCCGCTCCAGGCAATTGCAAAAGCAGTTTAAACCTGTATTGATTTCTGC
GTAAGCGGAAAGGAATTAGA

Downstream 100 bases:

>100_bases
GCATGCCTCTTGGTCGTGTAACACAACTCGTCGATTGCAGACAGAGTATGGGTATGGGTAAGGGGGGATCTCTTGCTCAG
AGGGGAACCATCTCTGAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTESTYPQLRIVPTRFLNPETTEILLEKIYTIDGIRRLVLNGPNLPATVPYGPARGTVNDNSLRRIIKVCGEDYLLHVQV
GAILLELEDASVIPLVKAACDEVFADKFPYGITEGTYMRSNMTTTDYAKYGIVDDKRILGMSDPKSKQRPIILQGTK

Sequences:

>Translated_157_residues
MTESTYPQLRIVPTRFLNPETTEILLEKIYTIDGIRRLVLNGPNLPATVPYGPARGTVNDNSLRRIIKVCGEDYLLHVQV
GAILLELEDASVIPLVKAACDEVFADKFPYGITEGTYMRSNMTTTDYAKYGIVDDKRILGMSDPKSKQRPIILQGTK
>Mature_156_residues
TESTYPQLRIVPTRFLNPETTEILLEKIYTIDGIRRLVLNGPNLPATVPYGPARGTVNDNSLRRIIKVCGEDYLLHVQVG
AILLELEDASVIPLVKAACDEVFADKFPYGITEGTYMRSNMTTTDYAKYGIVDDKRILGMSDPKSKQRPIILQGTK

Specific function: Unknown

COG id: COG4055

COG function: function code H; Methyl coenzyme M reductase, subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003901
- ProDom:   PD005228 [H]

Pfam domain/function: PF02505 MCR_D [H]

EC number: NA

Molecular weight: Translated: 17547; Mature: 17415

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESTYPQLRIVPTRFLNPETTEILLEKIYTIDGIRRLVLNGPNLPATVPYGPARGTVND
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCH
NSLRRIIKVCGEDYLLHVQVGAILLELEDASVIPLVKAACDEVFADKFPYGITEGTYMRS
HHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC
NMTTTDYAKYGIVDDKRILGMSDPKSKQRPIILQGTK
CCCCCCHHCCCCCCCCEEECCCCCCCCCCCEEEECCC
>Mature Secondary Structure 
TESTYPQLRIVPTRFLNPETTEILLEKIYTIDGIRRLVLNGPNLPATVPYGPARGTVND
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCH
NSLRRIIKVCGEDYLLHVQVGAILLELEDASVIPLVKAACDEVFADKFPYGITEGTYMRS
HHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC
NMTTTDYAKYGIVDDKRILGMSDPKSKQRPIILQGTK
CCCCCCHHCCCCCCCCEEECCCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3185509 [H]