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The map label for this gene is rpl44e

Identifier: 124486120

GI number: 124486120

Start: 1326573

End: 1326851

Strand: Reverse

Name: rpl44e

Synonym: Mlab_1301

Alternate gene names: 124486120

Gene position: 1326851-1326573 (Counterclockwise)

Preceding gene: 124486121

Following gene: 124486119

Centisome position: 73.51

GC content: 49.1

Gene sequence:

>279_bases
ATGAAGAAACCAGTAAAATTTAACACCTACTGCCCATACTGCCGGAAACACACCGAGCACGAGGTTGAGAGGGTAAAGAA
AGGTAAGACAACCGGTCTCCACTGGATTGACCGTCAGAAAGCACGCCGCAGCAACGTTGGTAACCGTGGTAAATTCGGCA
AAGTTCCGGGAGGAGACAAACCGACCAAGAAGATCAACATGCGCTACCGGTGCAAAGAATGCGGTAAAGCCCACTTAAGA
GAAGGTTACCGTGCAGGTAAATTCGAACTTACGGAGTGA

Upstream 100 bases:

>100_bases
AGATGGCAGATGTTCTGTGTAAAGACAACAAAGCCTTAAGTATCAGGCTTCGCAAATAAGTATGGTATTTGGTATTCCCG
TTTAAAAGGGGTAAATATTC

Downstream 100 bases:

>100_bases
GTAATATGGTAAAAGCATCCCGAGAAACCCGGAGCAAATTCCTGAAGGTAAAATGTCCGGACTGTGAAAATGAACAGCTC
GTATTCGAGAAAGCAACCTC

Product: 50S ribosomal protein L44e

Products: NA

Alternate protein names: Hla; La [H]

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MKKPVKFNTYCPYCRKHTEHEVERVKKGKTTGLHWIDRQKARRSNVGNRGKFGKVPGGDKPTKKINMRYRCKECGKAHLR
EGYRAGKFELTE

Sequences:

>Translated_92_residues
MKKPVKFNTYCPYCRKHTEHEVERVKKGKTTGLHWIDRQKARRSNVGNRGKFGKVPGGDKPTKKINMRYRCKECGKAHLR
EGYRAGKFELTE
>Mature_92_residues
MKKPVKFNTYCPYCRKHTEHEVERVKKGKTTGLHWIDRQKARRSNVGNRGKFGKVPGGDKPTKKINMRYRCKECGKAHLR
EGYRAGKFELTE

Specific function: Binds to the 23S rRNA. Binds deacetylated tRNA in the E site; when the tRNA binds a stretch of 7 amino acids are displaced to allow binding [H]

COG id: COG1631

COG function: function code J; Ribosomal protein L44E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L44e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000552
- InterPro:   IPR011332
- ProDom:   PD002841 [H]

Pfam domain/function: PF00935 Ribosomal_L44 [H]

EC number: NA

Molecular weight: Translated: 10781; Mature: 10781

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPVKFNTYCPYCRKHTEHEVERVKKGKTTGLHWIDRQKARRSNVGNRGKFGKVPGGDK
CCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
PTKKINMRYRCKECGKAHLREGYRAGKFELTE
CCCCCCCCHHHHHHHHHHHHCCCCCCCEEECC
>Mature Secondary Structure
MKKPVKFNTYCPYCRKHTEHEVERVKKGKTTGLHWIDRQKARRSNVGNRGKFGKVPGGDK
CCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
PTKKINMRYRCKECGKAHLREGYRAGKFELTE
CCCCCCCCHHHHHHHHHHHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8504167; 10937989; 10937990; 11828326; 11483524; 12150912; 12185246; 12860128 [H]