| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
Click here to switch to the map view.
The map label for this gene is 124486121
Identifier: 124486121
GI number: 124486121
Start: 1326893
End: 1327585
Strand: Reverse
Name: 124486121
Synonym: Mlab_1302
Alternate gene names: NA
Gene position: 1327585-1326893 (Counterclockwise)
Preceding gene: 124486122
Following gene: 124486120
Centisome position: 73.55
GC content: 50.22
Gene sequence:
>693_bases ATGAGCCGCATCAGTACCTCCGATCTGCACGGATACTTGATCGACGAGAGAAATATGGGTTCCCTTGCCGAAATTCCGGC AACGCTCTATGAAGAGATCCATGCCGATATTCTTTCACTCTACAAGCAGGCCGCGGCGCACGAGGATCCGTTCGGTGAGG GCGCACAAAGTATTCTAAAGGAGCGCGAAAGTCTGCGCGAATATATTCGTGATCTCTACGGGGTCAGGACACGAAAAATC CTCGCTCTTGCCCTCGCTCGGGCAAATGGTGAAGAAATCGACCGGGATGAAATCAGGATGATGGTGCCGGGCGAACGCGT TTTGTTTGATGTCGTGTATGAATCAGCTCTCTCATGCAGAAAGACTCTTTTAGATGGGAAACCAACATTAGAGACCACTG CATACCATTTCGTTCCCGCAGAGGTTTCAGCCGAACAAGCTCCGGTTTTGCTGCAGCCTGTGAACGAAACTCCGGATGAG TTGTGCGCAGATGAAGTGAACGTAACGTCCGCCGATGCCCATGCTCCCGAGTCATACCGCGTGATAGCGGTATATGAAAA TCTTCCAGAATTTCAGGATTATAGCGGACGAATTTACGCTCTTTCGCCAGGAGATGTCGTATCGCTGCCACCCCAGATGG CAGATGTTCTGTGTAAAGACAACAAAGCCTTAAGTATCAGGCTTCGCAAATAA
Upstream 100 bases:
>100_bases GAATAATTATACGCTGACAGCGGGCCGAAATGTTGTTCCCGAGGCATTGGGCGTTTTTCTCTGCTGCAGAGGGATTGCCG AATTGTCGGGAGGTATCTGA
Downstream 100 bases:
>100_bases GTATGGTATTTGGTATTCCCGTTTAAAAGGGGTAAATATTCATGAAGAAACCAGTAAAATTTAACACCTACTGCCCATAC TGCCGGAAACACACCGAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MSRISTSDLHGYLIDERNMGSLAEIPATLYEEIHADILSLYKQAAAHEDPFGEGAQSILKERESLREYIRDLYGVRTRKI LALALARANGEEIDRDEIRMMVPGERVLFDVVYESALSCRKTLLDGKPTLETTAYHFVPAEVSAEQAPVLLQPVNETPDE LCADEVNVTSADAHAPESYRVIAVYENLPEFQDYSGRIYALSPGDVVSLPPQMADVLCKDNKALSIRLRK
Sequences:
>Translated_230_residues MSRISTSDLHGYLIDERNMGSLAEIPATLYEEIHADILSLYKQAAAHEDPFGEGAQSILKERESLREYIRDLYGVRTRKI LALALARANGEEIDRDEIRMMVPGERVLFDVVYESALSCRKTLLDGKPTLETTAYHFVPAEVSAEQAPVLLQPVNETPDE LCADEVNVTSADAHAPESYRVIAVYENLPEFQDYSGRIYALSPGDVVSLPPQMADVLCKDNKALSIRLRK >Mature_229_residues SRISTSDLHGYLIDERNMGSLAEIPATLYEEIHADILSLYKQAAAHEDPFGEGAQSILKERESLREYIRDLYGVRTRKIL ALALARANGEEIDRDEIRMMVPGERVLFDVVYESALSCRKTLLDGKPTLETTAYHFVPAEVSAEQAPVLLQPVNETPDEL CADEVNVTSADAHAPESYRVIAVYENLPEFQDYSGRIYALSPGDVVSLPPQMADVLCKDNKALSIRLRK
Specific function: Unknown
COG id: COG1711
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25683; Mature: 25552
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRISTSDLHGYLIDERNMGSLAEIPATLYEEIHADILSLYKQAAAHEDPFGEGAQSILK CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH ERESLREYIRDLYGVRTRKILALALARANGEEIDRDEIRMMVPGERVLFDVVYESALSCR HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHEEEECCCHHHHHHHHHHHHHHHH KTLLDGKPTLETTAYHFVPAEVSAEQAPVLLQPVNETPDELCADEVNVTSADAHAPESYR HHHHCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCEE VIAVYENLPEFQDYSGRIYALSPGDVVSLPPQMADVLCKDNKALSIRLRK EEEEECCCCCCCCCCCEEEEECCCCEEECCHHHHHHHHCCCCEEEEEECC >Mature Secondary Structure SRISTSDLHGYLIDERNMGSLAEIPATLYEEIHADILSLYKQAAAHEDPFGEGAQSILK CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH ERESLREYIRDLYGVRTRKILALALARANGEEIDRDEIRMMVPGERVLFDVVYESALSCR HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHEEEECCCHHHHHHHHHHHHHHHH KTLLDGKPTLETTAYHFVPAEVSAEQAPVLLQPVNETPDELCADEVNVTSADAHAPESYR HHHHCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCEE VIAVYENLPEFQDYSGRIYALSPGDVVSLPPQMADVLCKDNKALSIRLRK EEEEECCCCCCCCCCCEEEEECCCCEEECCHHHHHHHHCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA