| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485952
Identifier: 124485952
GI number: 124485952
Start: 1145190
End: 1145828
Strand: Reverse
Name: 124485952
Synonym: Mlab_1132
Alternate gene names: NA
Gene position: 1145828-1145190 (Counterclockwise)
Preceding gene: 124485953
Following gene: 124485951
Centisome position: 63.48
GC content: 43.51
Gene sequence:
>639_bases ATGAAAATAATCGGATTCATCGGAAGCTATCGGAAAGGCGGGAATACCGATACGGCTGTAAGAACCGTTCTTGAGGGGGC GATGAATCTGGGTGCAGACGTTGAAGCCGTCTATCTGAAAGATTACGAAATAGCGGATTGTGTCGGGTGCGAAGCGTGTA AAACGACATTCGAGTGTGTTATCCGCGACGATATGCAGAAAATATATGCTAAAATACAGGAGGCTGATGGTATTATCATC GGGTCTCCAACCTATTTTTACAACGTAACCGGGATCATAAAAAATATGATCGACCGGCTCTACTGCTATGAGGTTTTTGA TGAAGACGACCGGTCGGTATGGATGGGCATACACGAAGCAACGGGAATTAAATATGCAACGGTCGTTGCCGTTTGCGAGC AGAAAGATCCGGAGGATATGGGGTATACTACCGTCACAATGACCAAATCCCTGCAGGCTCTCGGATACAGAGTCGTGGAT GAGCTTAAAATCTATAATGTGTATAACAAAACCGATCTGCTGCTGGATACGGATCAATTAAGCGAGCTGGAAGAAGCCGG GAAAAAATTAGTCAAAACGATTCGGCTCAAAGAAAAAATACAGAATATTGTGAATATAAAAAATGAGCAGATAAACTAA
Upstream 100 bases:
>100_bases CGATCGAGTACGAATAAATTACCTGATGCTGCAGAGACTAATCTTTGCAGATATCCATCCCGGGATTAAAATCCGGGAAG ATGATTAGATGGTGTAACGT
Downstream 100 bases:
>100_bases AACAACATATTAAAGAGGAAAACATGAGCAATATTGCAGTAATTGTTGGAAGCGTTAGAAAAAACGGGAATACAGAAATA TTAGCGAAGGCCTTTGTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: AF-3; Af3; Isf-3 [H]
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MKIIGFIGSYRKGGNTDTAVRTVLEGAMNLGADVEAVYLKDYEIADCVGCEACKTTFECVIRDDMQKIYAKIQEADGIII GSPTYFYNVTGIIKNMIDRLYCYEVFDEDDRSVWMGIHEATGIKYATVVAVCEQKDPEDMGYTTVTMTKSLQALGYRVVD ELKIYNVYNKTDLLLDTDQLSELEEAGKKLVKTIRLKEKIQNIVNIKNEQIN
Sequences:
>Translated_212_residues MKIIGFIGSYRKGGNTDTAVRTVLEGAMNLGADVEAVYLKDYEIADCVGCEACKTTFECVIRDDMQKIYAKIQEADGIII GSPTYFYNVTGIIKNMIDRLYCYEVFDEDDRSVWMGIHEATGIKYATVVAVCEQKDPEDMGYTTVTMTKSLQALGYRVVD ELKIYNVYNKTDLLLDTDQLSELEEAGKKLVKTIRLKEKIQNIVNIKNEQIN >Mature_212_residues MKIIGFIGSYRKGGNTDTAVRTVLEGAMNLGADVEAVYLKDYEIADCVGCEACKTTFECVIRDDMQKIYAKIQEADGIII GSPTYFYNVTGIIKNMIDRLYCYEVFDEDDRSVWMGIHEATGIKYATVVAVCEQKDPEDMGYTTVTMTKSLQALGYRVVD ELKIYNVYNKTDLLLDTDQLSELEEAGKKLVKTIRLKEKIQNIVNIKNEQIN
Specific function: Redox-active protein probably involved in electron transport [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ssuE family. Isf subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005025 [H]
Pfam domain/function: PF03358 FMN_red [H]
EC number: NA
Molecular weight: Translated: 23951; Mature: 23951
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIIGFIGSYRKGGNTDTAVRTVLEGAMNLGADVEAVYLKDYEIADCVGCEACKTTFECV CEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCHHHHHHHHHH IRDDMQKIYAKIQEADGIIIGSPTYFYNVTGIIKNMIDRLYCYEVFDEDDRSVWMGIHEA HHHHHHHHHHHHHHCCCEEECCCHHEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHH TGIKYATVVAVCEQKDPEDMGYTTVTMTKSLQALGYRVVDELKIYNVYNKTDLLLDTDQL CCCHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEEEECCCEEEECHHHH SELEEAGKKLVKTIRLKEKIQNIVNIKNEQIN HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKIIGFIGSYRKGGNTDTAVRTVLEGAMNLGADVEAVYLKDYEIADCVGCEACKTTFECV CEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCHHHHHHHHHH IRDDMQKIYAKIQEADGIIIGSPTYFYNVTGIIKNMIDRLYCYEVFDEDDRSVWMGIHEA HHHHHHHHHHHHHHCCCEEECCCHHEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHH TGIKYATVVAVCEQKDPEDMGYTTVTMTKSLQALGYRVVDELKIYNVYNKTDLLLDTDQL CCCHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEEEECCCEEEECHHHH SELEEAGKKLVKTIRLKEKIQNIVNIKNEQIN HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]