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The map label for this gene is yhaM [H]

Identifier: 124485735

GI number: 124485735

Start: 908518

End: 909459

Strand: Reverse

Name: yhaM [H]

Synonym: Mlab_0913

Alternate gene names: 124485735

Gene position: 909459-908518 (Counterclockwise)

Preceding gene: 124485738

Following gene: 124485734

Centisome position: 50.39

GC content: 52.44

Gene sequence:

>942_bases
ATGGAAAAAACCCAATTCGTAGAAAATATTGTTGAATCGACCCCGGTCGACTCACTCTTCCTGATCAAGCGTGCCGACCT
TCGAAGCAAACGCGGCGAGCAGTTCGCCCATCTCACCCTTGCCGATAAAACCGGCCTCATCGAAGCGAAGTTTTACGGAG
AAAAAGCCGTGGAAATCCCCAGGATCGTCCAGACCGGCCGCGTCTATAAAATATCCGGTAAAGGCAGAGTGAATCAGAAC
GGCGAAATCCATATCTTCTCCGACTCGCCCGAAACCATTAATGATATCGCTGCCGGACCGATCGACCTTCTGCCCAGTCA
GGAAAGTGCGTTCGTCTACACGCCTGCCGATCTCAACGCCAATGCGCTGGAAATTCAGAAGATCGTCGGGACCATCAGAA
ACACGGACCTCAAACTCTTCGTTGCCTGCTGTCTCGATGCGCGGTTCTACGGATGTCCGGCCGCGATCCGCCGTCACCAC
GAATACACCGGAGGTCTCTGCGAACACTCTCTTGAAACCGTCAAGATCGCGCTTTCGCTTGTCGAGATCATGCCAAGGAC
CGATATAAACCGGGATATGGTCATTGCAGGTGCAGTTCTCCATGACATCGGAAAAATTTTCTGTTTCGACAAAGTCGGCT
ACGGCTATGTTCCAAACGACACCTACAACCTCATCGAACATATCACGATGGGGATCATGTACATCGACGAGTACAAAAAC
CTCATCACAGACGAGCAGCTTCTTCAACTTCGACACATCATCCAGTCCCACCACGGTTCCTACGGCGATGTCATCCCCCT
CACTGTCGAGGCCTGGCTCGTCCACGAGGCCGATTCCGGAAGCTCGCTTCTTCGAAGCATCGTCGATGATCTTTCCGAAA
CACCCGCCGGGCAGAAGAAAAAAGGTCTCCGGTCCGAGAAATTCTTGTGGCATGCCGTATAA

Upstream 100 bases:

>100_bases
TATCATATCTTCGACGCTGTAAAACAGAATCATGATTAGGCAAAACGACACACCCATACTATCAACTGTACTTCTAAACG
GTGAAAATGCGAGGATAAAC

Downstream 100 bases:

>100_bases
TCACGGAGCCATAACCAACAATTAATACCGGAGTCCAACAATAGTAATTACGTAAGGAAGGCACCCATGGAACACGCAGA
CATTATATCTGGAGCTTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MEKTQFVENIVESTPVDSLFLIKRADLRSKRGEQFAHLTLADKTGLIEAKFYGEKAVEIPRIVQTGRVYKISGKGRVNQN
GEIHIFSDSPETINDIAAGPIDLLPSQESAFVYTPADLNANALEIQKIVGTIRNTDLKLFVACCLDARFYGCPAAIRRHH
EYTGGLCEHSLETVKIALSLVEIMPRTDINRDMVIAGAVLHDIGKIFCFDKVGYGYVPNDTYNLIEHITMGIMYIDEYKN
LITDEQLLQLRHIIQSHHGSYGDVIPLTVEAWLVHEADSGSSLLRSIVDDLSETPAGQKKKGLRSEKFLWHAV

Sequences:

>Translated_313_residues
MEKTQFVENIVESTPVDSLFLIKRADLRSKRGEQFAHLTLADKTGLIEAKFYGEKAVEIPRIVQTGRVYKISGKGRVNQN
GEIHIFSDSPETINDIAAGPIDLLPSQESAFVYTPADLNANALEIQKIVGTIRNTDLKLFVACCLDARFYGCPAAIRRHH
EYTGGLCEHSLETVKIALSLVEIMPRTDINRDMVIAGAVLHDIGKIFCFDKVGYGYVPNDTYNLIEHITMGIMYIDEYKN
LITDEQLLQLRHIIQSHHGSYGDVIPLTVEAWLVHEADSGSSLLRSIVDDLSETPAGQKKKGLRSEKFLWHAV
>Mature_313_residues
MEKTQFVENIVESTPVDSLFLIKRADLRSKRGEQFAHLTLADKTGLIEAKFYGEKAVEIPRIVQTGRVYKISGKGRVNQN
GEIHIFSDSPETINDIAAGPIDLLPSQESAFVYTPADLNANALEIQKIVGTIRNTDLKLFVACCLDARFYGCPAAIRRHH
EYTGGLCEHSLETVKIALSLVEIMPRTDINRDMVIAGAVLHDIGKIFCFDKVGYGYVPNDTYNLIEHITMGIMYIDEYKN
LITDEQLLQLRHIIQSHHGSYGDVIPLTVEAWLVHEADSGSSLLRSIVDDLSETPAGQKKKGLRSEKFLWHAV

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 34996; Mature: 34996

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKTQFVENIVESTPVDSLFLIKRADLRSKRGEQFAHLTLADKTGLIEAKFYGEKAVEIP
CCHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHCCH
RIVQTGRVYKISGKGRVNQNGEIHIFSDSPETINDIAAGPIDLLPSQESAFVYTPADLNA
HHHHCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHCCCCHHCCCCCCCEEEEECCCCCC
NALEIQKIVGTIRNTDLKLFVACCLDARFYGCPAAIRRHHEYTGGLCEHSLETVKIALSL
CHHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VEIMPRTDINRDMVIAGAVLHDIGKIFCFDKVGYGYVPNDTYNLIEHITMGIMYIDEYKN
HHHHCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LITDEQLLQLRHIIQSHHGSYGDVIPLTVEAWLVHEADSGSSLLRSIVDDLSETPAGQKK
HCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCHH
KGLRSEKFLWHAV
CCCCCCCEEEECC
>Mature Secondary Structure
MEKTQFVENIVESTPVDSLFLIKRADLRSKRGEQFAHLTLADKTGLIEAKFYGEKAVEIP
CCHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHCCH
RIVQTGRVYKISGKGRVNQNGEIHIFSDSPETINDIAAGPIDLLPSQESAFVYTPADLNA
HHHHCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHCCCCHHCCCCCCCEEEEECCCCCC
NALEIQKIVGTIRNTDLKLFVACCLDARFYGCPAAIRRHHEYTGGLCEHSLETVKIALSL
CHHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VEIMPRTDINRDMVIAGAVLHDIGKIFCFDKVGYGYVPNDTYNLIEHITMGIMYIDEYKN
HHHHCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LITDEQLLQLRHIIQSHHGSYGDVIPLTVEAWLVHEADSGSSLLRSIVDDLSETPAGQKK
HCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCHH
KGLRSEKFLWHAV
CCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]