| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is aceE [H]
Identifier: 124266067
GI number: 124266067
Start: 913034
End: 915709
Strand: Direct
Name: aceE [H]
Synonym: Mpe_A0874
Alternate gene names: 124266067
Gene position: 913034-915709 (Clockwise)
Preceding gene: 124266065
Following gene: 124266069
Centisome position: 22.58
GC content: 72.27
Gene sequence:
>2676_bases ATGACCCAAGTGTTCGAACCCCTGCTGTTCCAGGCCGCCGCCGCCGACACCGATCCCGCCGAGACCGCCGAGTGGCGCGA TGCCCTGGCCGCGGTGCTGGCCGCCGCCGGGCCGGAGCGCGCGCGTTTCCTGCTGGACCAGCTGGCCGCGCAGGCCAGCG AGCCCGCCATCGCCTGGCAGCCGCGCGGCGGCGGCTCGCCCTACGTCAACACCATCCCGGTCGAGCGCCAGCCGCGCTTC CCCGGCGATCTGGCGATCGAGGAGCGCCTGGCCTCCCTGATGCGCTGGAACGCGCTGGCGATGGTGGTGCGCGCCAATCA GGCCTACGGCGAACTCGGCGGCCACATCGCCAGCTACGCGAGCGCGGCCGATCTGTTCGAGGTCGGCTTCAACCACTTCT TCCGCGCGCGCAACGCGCAGCAGGGTGGCGACCTGGTGTTCTACCAGCCGCACTCGGCGCCCGGCGTCTACGCGCGTGCC TTCCTCGAAGGCCGCCTGAGCGAGGCCGACCTGGCCCACTACCGGCAGGAGCTCGCCGCGCCGGCGGCCGGCGCGCAGGG CCTGTCGAGCTATCCGCATCCGTGGCTGATGCCCGAGTTCTGGCAGTTCCCCACCGGCTCGATGGGCATCGGCCCCATCA GCTCGATCTACCAGGCGCGCTTCATGCGCTACCTGCAGCACCGCGGGCTGCTGCAGACCGAGGGCCGCCGCGTCTGGGGC GTGTTCGGCGACGGCGAGATGGACGAGCCCGAGAGCATGAGCGCGCTCACGCTCGCCGCGCGCGAAAAGCTCGACAACCT CACATGGGTGATCAACTGCAACCTGCAGCGCCTGGACGGCCCGGTGCGCGGCAACGGCCGCATCATCGACGAGCTGGAGG CGCTGTTCGCCGGCGCCGGCTGGCAGGTCATCAAGCTGGTGTGGGGCTCCGACTGGGACGGCCTGTTCGCGCGCGACACC CACGGTGCGCTGCGCAAGGCCTTCGCCGGCACCGTGGACGGCCAGTTCCAGACCTTCGCCGCCAAGGACGGCCGCTACAA CCGCGAGCACTTCTTCGGCCAGACCCCCGAGCTCGCCGCGCTGGCCCAGGGCCTGACCGACGAGCAGATCGACCGGCTGC GCCGCGGCGGCCACGACATGGTGAAGATCCACGCCGCCTACCACGCGGCGATGCAGTGCCGCGGCCGGCCGGTGGTGATC CTGGCGCAGACCAAGAAGGGCTACGGCATGGGCGAGGCCGGGCAGGGCCGCATGACCACGCACCAGCAGAAGAAGCTCGA CCGCGACGACCTGATCGCCTTCCGCAACCGCTTCGCGCTGCCGCTCAGCGACGAGCAGGCCGCGAGCCTGGCGTTCTACA AGCCGGCCGACGACAGCCCCGAGATGCGTTACCTGCACGCGCGCCGCGCCGCGCTGGGCGGCCAGATCCCGGCGCGGGTG GCGCAGGCGCCGCAGCTGGCGGTGCCGCCGGTGGCGCGCTGGGGTGACTTCGCGCTGAACGCCGACGGCAAGGAGATGAG CACCACCATGGCCTTCGTGCGCATGCTCACCGCGCTGCTGAAGGACGCGCAGCTCGGCCCGCGCATCGTGCCCATCGTCG CCGACGAGGCGCGCACCTTCGGCATGGCCAACCTGTTCAAGCAGATCGGCATCTACTCCAACCTCGGCCAGAACTACGAG CCCGAGGACATCGGCTCGGTGCTCAGCTACCGCGAGGCCACCGACGGCCAGATCCTGGAGGAGGGCATCAGCGAGGCCGG TGCGCTGAGCTCCTGGGTGGCCGCGGCCACCAGCTACAGCGTGCACGGCGTGCCGATGCTGCCGTTCTACATCTACTACT CGATGTTCGGCTTCCAGCGCGTGGGCGACCTGATCTGGGCCGCGGCCGACCAGCGCGCGCGCGGCTTCCTGCTCGGCGCC ACCGCGGGCCGCACCACGCTGGGCGGCGAGGGCCTGCAGCACCAGGACGGCTCCAGCCCACTGCAGGCGTCGACCGTGCC CAACTGCCGCACCTGGGACCCGGCCTTCGCGGGCGAGGTGGCGGTGATCGTGGAGCACGGCATGCGCCGCATGCTCGAGG AGCAGGCCGACGAGTTCTTCTACCTGCTGCTGATGAACGAGAACTACGCCAACCCCTCGCTGCCCGAGGGTGCGGCGGCC GGCGTGCTGAAAGGCCTGTACCGCTTCCGGCCGGCGCAGGGCAGGAAGGCCGCGCAGGTGCGCCTGCTCGGCTCCGGCGC GATCCTGCGCGAGGTGCTGGCCGCGGCCGAGCTGCTGCGCAACGACTACGGCGTGGAGGCCGAGGTGTGGAGCGCCACCA GCTACAGCGAGCTGCAGCGCGAGGCCATCGAGGTGGAGCGCCACAACCGCCTGCAGCCGCAGGCGCCGCGCCGCCGCAGC CACGTGGCGCAGTGCCTGGCCGGCAAGGCGCCGGTGGTGGCCGCGAGCGACTACGTGCGCGCCTGGCCGCAGCTGATCGC ACCCTACGCCGAAGCCTCGCGCTTCGTGGCGCTGGGCACCGACGGCTTCGGCCGCAGCGACACGCGCGAGCAGCTGCGCC GCCACTTCGAGGTGGACCGCGCGCACATCGCGCTGGCGGCGCTGGATGCGCTGGCGGACGCGGGGAGCGTGCCGCGGGAG GTGGCGGTGAAGGCAGCGGGGCGGTTGGCGGGCTGA
Upstream 100 bases:
>100_bases AGTCGCAGCACTTTATGCGGTAAATCGGGCCGCCGGCACCGTCTTTCGGTGGCATCTGCGGCCTCCGCAGGCGCACAGTG CAGGGCAGAGGAGCCTTGCC
Downstream 100 bases:
>100_bases AGCGCGTCCCGCGGCGGCGCGGGATTCATCTCAACCGAGCAAGCGCCTGAGCCACGCCACCAAGCGCGCCCAGACCCCCT GGGCCGGCGCCTCGGTCGCT
Product: 2-oxoacid dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 891; Mature: 890
Protein sequence:
>891_residues MTQVFEPLLFQAAAADTDPAETAEWRDALAAVLAAAGPERARFLLDQLAAQASEPAIAWQPRGGGSPYVNTIPVERQPRF PGDLAIEERLASLMRWNALAMVVRANQAYGELGGHIASYASAADLFEVGFNHFFRARNAQQGGDLVFYQPHSAPGVYARA FLEGRLSEADLAHYRQELAAPAAGAQGLSSYPHPWLMPEFWQFPTGSMGIGPISSIYQARFMRYLQHRGLLQTEGRRVWG VFGDGEMDEPESMSALTLAAREKLDNLTWVINCNLQRLDGPVRGNGRIIDELEALFAGAGWQVIKLVWGSDWDGLFARDT HGALRKAFAGTVDGQFQTFAAKDGRYNREHFFGQTPELAALAQGLTDEQIDRLRRGGHDMVKIHAAYHAAMQCRGRPVVI LAQTKKGYGMGEAGQGRMTTHQQKKLDRDDLIAFRNRFALPLSDEQAASLAFYKPADDSPEMRYLHARRAALGGQIPARV AQAPQLAVPPVARWGDFALNADGKEMSTTMAFVRMLTALLKDAQLGPRIVPIVADEARTFGMANLFKQIGIYSNLGQNYE PEDIGSVLSYREATDGQILEEGISEAGALSSWVAAATSYSVHGVPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGA TAGRTTLGGEGLQHQDGSSPLQASTVPNCRTWDPAFAGEVAVIVEHGMRRMLEEQADEFFYLLLMNENYANPSLPEGAAA GVLKGLYRFRPAQGRKAAQVRLLGSGAILREVLAAAELLRNDYGVEAEVWSATSYSELQREAIEVERHNRLQPQAPRRRS HVAQCLAGKAPVVAASDYVRAWPQLIAPYAEASRFVALGTDGFGRSDTREQLRRHFEVDRAHIALAALDALADAGSVPRE VAVKAAGRLAG
Sequences:
>Translated_891_residues MTQVFEPLLFQAAAADTDPAETAEWRDALAAVLAAAGPERARFLLDQLAAQASEPAIAWQPRGGGSPYVNTIPVERQPRF PGDLAIEERLASLMRWNALAMVVRANQAYGELGGHIASYASAADLFEVGFNHFFRARNAQQGGDLVFYQPHSAPGVYARA FLEGRLSEADLAHYRQELAAPAAGAQGLSSYPHPWLMPEFWQFPTGSMGIGPISSIYQARFMRYLQHRGLLQTEGRRVWG VFGDGEMDEPESMSALTLAAREKLDNLTWVINCNLQRLDGPVRGNGRIIDELEALFAGAGWQVIKLVWGSDWDGLFARDT HGALRKAFAGTVDGQFQTFAAKDGRYNREHFFGQTPELAALAQGLTDEQIDRLRRGGHDMVKIHAAYHAAMQCRGRPVVI LAQTKKGYGMGEAGQGRMTTHQQKKLDRDDLIAFRNRFALPLSDEQAASLAFYKPADDSPEMRYLHARRAALGGQIPARV AQAPQLAVPPVARWGDFALNADGKEMSTTMAFVRMLTALLKDAQLGPRIVPIVADEARTFGMANLFKQIGIYSNLGQNYE PEDIGSVLSYREATDGQILEEGISEAGALSSWVAAATSYSVHGVPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGA TAGRTTLGGEGLQHQDGSSPLQASTVPNCRTWDPAFAGEVAVIVEHGMRRMLEEQADEFFYLLLMNENYANPSLPEGAAA GVLKGLYRFRPAQGRKAAQVRLLGSGAILREVLAAAELLRNDYGVEAEVWSATSYSELQREAIEVERHNRLQPQAPRRRS HVAQCLAGKAPVVAASDYVRAWPQLIAPYAEASRFVALGTDGFGRSDTREQLRRHFEVDRAHIALAALDALADAGSVPRE VAVKAAGRLAG >Mature_890_residues TQVFEPLLFQAAAADTDPAETAEWRDALAAVLAAAGPERARFLLDQLAAQASEPAIAWQPRGGGSPYVNTIPVERQPRFP GDLAIEERLASLMRWNALAMVVRANQAYGELGGHIASYASAADLFEVGFNHFFRARNAQQGGDLVFYQPHSAPGVYARAF LEGRLSEADLAHYRQELAAPAAGAQGLSSYPHPWLMPEFWQFPTGSMGIGPISSIYQARFMRYLQHRGLLQTEGRRVWGV FGDGEMDEPESMSALTLAAREKLDNLTWVINCNLQRLDGPVRGNGRIIDELEALFAGAGWQVIKLVWGSDWDGLFARDTH GALRKAFAGTVDGQFQTFAAKDGRYNREHFFGQTPELAALAQGLTDEQIDRLRRGGHDMVKIHAAYHAAMQCRGRPVVIL AQTKKGYGMGEAGQGRMTTHQQKKLDRDDLIAFRNRFALPLSDEQAASLAFYKPADDSPEMRYLHARRAALGGQIPARVA QAPQLAVPPVARWGDFALNADGKEMSTTMAFVRMLTALLKDAQLGPRIVPIVADEARTFGMANLFKQIGIYSNLGQNYEP EDIGSVLSYREATDGQILEEGISEAGALSSWVAAATSYSVHGVPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGAT AGRTTLGGEGLQHQDGSSPLQASTVPNCRTWDPAFAGEVAVIVEHGMRRMLEEQADEFFYLLLMNENYANPSLPEGAAAG VLKGLYRFRPAQGRKAAQVRLLGSGAILREVLAAAELLRNDYGVEAEVWSATSYSELQREAIEVERHNRLQPQAPRRRSH VAQCLAGKAPVVAASDYVRAWPQLIAPYAEASRFVALGTDGFGRSDTREQLRRHFEVDRAHIALAALDALADAGSVPREV AVKAAGRLAG
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=876, Percent_Identity=53.4246575342466, Blast_Score=961, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 97499; Mature: 97368
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQVFEPLLFQAAAADTDPAETAEWRDALAAVLAAAGPERARFLLDQLAAQASEPAIAWQ CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEC PRGGGSPYVNTIPVERQPRFPGDLAIEERLASLMRWNALAMVVRANQAYGELGGHIASYA CCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHH SAADLFEVGFNHFFRARNAQQGGDLVFYQPHSAPGVYARAFLEGRLSEADLAHYRQELAA HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCC PAAGAQGLSSYPHPWLMPEFWQFPTGSMGIGPISSIYQARFMRYLQHRGLLQTEGRRVWG CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEE VFGDGEMDEPESMSALTLAAREKLDNLTWVINCNLQRLDGPVRGNGRIIDELEALFAGAG EECCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCCHHHHHHHHHCCCC WQVIKLVWGSDWDGLFARDTHGALRKAFAGTVDGQFQTFAAKDGRYNREHFFGQTPELAA CEEEEEEECCCCCCCEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCCCHHHH LAQGLTDEQIDRLRRGGHDMVKIHAAYHAAMQCRGRPVVILAQTKKGYGMGEAGQGRMTT HHCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCC HQQKKLDRDDLIAFRNRFALPLSDEQAASLAFYKPADDSPEMRYLHARRAALGGQIPARV HHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHH AQAPQLAVPPVARWGDFALNADGKEMSTTMAFVRMLTALLKDAQLGPRIVPIVADEARTF HCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH GMANLFKQIGIYSNLGQNYEPEDIGSVLSYREATDGQILEEGISEAGALSSWVAAATSYS HHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC VHGVPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGSSP CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC LQASTVPNCRTWDPAFAGEVAVIVEHGMRRMLEEQADEFFYLLLMNENYANPSLPEGAAA CCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHH GVLKGLYRFRPAQGRKAAQVRLLGSGAILREVLAAAELLRNDYGVEAEVWSATSYSELQR HHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHH EAIEVERHNRLQPQAPRRRSHVAQCLAGKAPVVAASDYVRAWPQLIAPYAEASRFVALGT HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCEEEECC DGFGRSDTREQLRRHFEVDRAHIALAALDALADAGSVPREVAVKAAGRLAG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure TQVFEPLLFQAAAADTDPAETAEWRDALAAVLAAAGPERARFLLDQLAAQASEPAIAWQ CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEC PRGGGSPYVNTIPVERQPRFPGDLAIEERLASLMRWNALAMVVRANQAYGELGGHIASYA CCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHH SAADLFEVGFNHFFRARNAQQGGDLVFYQPHSAPGVYARAFLEGRLSEADLAHYRQELAA HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCC PAAGAQGLSSYPHPWLMPEFWQFPTGSMGIGPISSIYQARFMRYLQHRGLLQTEGRRVWG CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEE VFGDGEMDEPESMSALTLAAREKLDNLTWVINCNLQRLDGPVRGNGRIIDELEALFAGAG EECCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCCHHHHHHHHHCCCC WQVIKLVWGSDWDGLFARDTHGALRKAFAGTVDGQFQTFAAKDGRYNREHFFGQTPELAA CEEEEEEECCCCCCCEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCCCHHHH LAQGLTDEQIDRLRRGGHDMVKIHAAYHAAMQCRGRPVVILAQTKKGYGMGEAGQGRMTT HHCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCC HQQKKLDRDDLIAFRNRFALPLSDEQAASLAFYKPADDSPEMRYLHARRAALGGQIPARV HHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHH AQAPQLAVPPVARWGDFALNADGKEMSTTMAFVRMLTALLKDAQLGPRIVPIVADEARTF HCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH GMANLFKQIGIYSNLGQNYEPEDIGSVLSYREATDGQILEEGISEAGALSSWVAAATSYS HHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC VHGVPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGSSP CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC LQASTVPNCRTWDPAFAGEVAVIVEHGMRRMLEEQADEFFYLLLMNENYANPSLPEGAAA CCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHH GVLKGLYRFRPAQGRKAAQVRLLGSGAILREVLAAAELLRNDYGVEAEVWSATSYSELQR HHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHH EAIEVERHNRLQPQAPRRRSHVAQCLAGKAPVVAASDYVRAWPQLIAPYAEASRFVALGT HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCEEEECC DGFGRSDTREQLRRHFEVDRAHIALAALDALADAGSVPREVAVKAAGRLAG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9171401; 10984043 [H]