| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is ssuA [H]
Identifier: 124265306
GI number: 124265306
Start: 117100
End: 118137
Strand: Direct
Name: ssuA [H]
Synonym: Mpe_A0113
Alternate gene names: 124265306
Gene position: 117100-118137 (Clockwise)
Preceding gene: 124265305
Following gene: 124265307
Centisome position: 2.9
GC content: 70.23
Gene sequence:
>1038_bases ATGAGCCATTCGGATTCTTCTTCCTCGTCCCGCTGGAGACGGCTGCCGCAGTCGGCCCGTCGCCACCTGCTGCAGGCCTT CGGCGCCGCCGCCGGCGCCGCGGCGCTCGGCACCTGGCCGCTGGCGCGTGCACAGTCCTCGGGCGCGGCGCGCGAGCCGC TGCGCGTGGGCTACCAGAAGTCGGCCAGCCTGTTCGTGCTGCAGAAGGCGCAGGGCTCGCTGGAGAAGAAGCTCGCGCCG CTGGGCGTGGGTGTGAAGTGGATCGAGTTCCCGGCCGGGCCGCAGTTGCTGGAAGGCCTGAACGTCGGCTCGGTCGACAT CGGCCATGTGGGCGAGGCGCCGCCGATCTTCGCGCAGGCGGCCGGCGCCGACTTCGTCTACATCGGCCACGACCCGGCCG CGCCGGAGGCCGAGGCCATCGTCGTGCCGCAGGGCTCGGCGATCAGGAGCGTGGCCGAGCTCAACGGCAGGAAGGTCGCG CTGAACAAGGGCTCGAACGTGCACTACCTGCTGGTGCGCGCGCTCGAGAAGGCCGGCCTGAAGTACGCCGACATCCAGCC GGTCTTCCTGCCGCCGGCCGATGCGCGTGCCGCCTTCGAGAAGGGCGCGGTCGATGCCTGGGCGATCTGGGATCCCTTCC TCGCCGCGGTCGAGAAGCAGACCGGTGCGCGCGTGCTGGTCGACGGCCGCAACGGCGTCGCCAACAACTACCTGTTCTAC CTGGCCGAGCGCAAGTTCGTGCAGAAGAACGGCGACGTGATCCAGGCGCTGTTCGCCGATTCGCAGGAGCAGGGCCGCTG GCTGAAGGCCGACTTGAAGCGCGCCGCGGCGATCATTGCGCCACTGCAGGGCCTGGACCCGGAGATCGTCGAGCTCGCGC TGCGCCGCTACAACTTCAATGTCACGCCGCTCAGCGAGCAGGTCGCGGCGCAGCAGCAGCAGATCGCCGACGTGTTCCAC GAGCTCAAGCTGATCCCCAAGCCGATCCGCGTGGCCGACGCGCTGCCCGCGGTGCGCGTCGCGCAGAAGCAGCCCTGA
Upstream 100 bases:
>100_bases TGTCTCTGCCTTCTGGCCTGGTTCATCGGCCGCCCCCGTCCTTTCTTTCCTCGTTGTTGCGCGCGGCGGCGATCGTCGCG TCCACGAACCGGAGTTCCCC
Downstream 100 bases:
>100_bases GGTGACGGCGATGAGCTTCCATCGACATGCGTTGTTCGCCGGCGTGCTGGCGCTGGCCACCGGGCTGCTGGGGTTCGCGC CGGGGGCGCACAGCCAGCCG
Product: sulfonate binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MSHSDSSSSSRWRRLPQSARRHLLQAFGAAAGAAALGTWPLARAQSSGAAREPLRVGYQKSASLFVLQKAQGSLEKKLAP LGVGVKWIEFPAGPQLLEGLNVGSVDIGHVGEAPPIFAQAAGADFVYIGHDPAAPEAEAIVVPQGSAIRSVAELNGRKVA LNKGSNVHYLLVRALEKAGLKYADIQPVFLPPADARAAFEKGAVDAWAIWDPFLAAVEKQTGARVLVDGRNGVANNYLFY LAERKFVQKNGDVIQALFADSQEQGRWLKADLKRAAAIIAPLQGLDPEIVELALRRYNFNVTPLSEQVAAQQQQIADVFH ELKLIPKPIRVADALPAVRVAQKQP
Sequences:
>Translated_345_residues MSHSDSSSSSRWRRLPQSARRHLLQAFGAAAGAAALGTWPLARAQSSGAAREPLRVGYQKSASLFVLQKAQGSLEKKLAP LGVGVKWIEFPAGPQLLEGLNVGSVDIGHVGEAPPIFAQAAGADFVYIGHDPAAPEAEAIVVPQGSAIRSVAELNGRKVA LNKGSNVHYLLVRALEKAGLKYADIQPVFLPPADARAAFEKGAVDAWAIWDPFLAAVEKQTGARVLVDGRNGVANNYLFY LAERKFVQKNGDVIQALFADSQEQGRWLKADLKRAAAIIAPLQGLDPEIVELALRRYNFNVTPLSEQVAAQQQQIADVFH ELKLIPKPIRVADALPAVRVAQKQP >Mature_344_residues SHSDSSSSSRWRRLPQSARRHLLQAFGAAAGAAALGTWPLARAQSSGAAREPLRVGYQKSASLFVLQKAQGSLEKKLAPL GVGVKWIEFPAGPQLLEGLNVGSVDIGHVGEAPPIFAQAAGADFVYIGHDPAAPEAEAIVVPQGSAIRSVAELNGRKVAL NKGSNVHYLLVRALEKAGLKYADIQPVFLPPADARAAFEKGAVDAWAIWDPFLAAVEKQTGARVLVDGRNGVANNYLFYL AERKFVQKNGDVIQALFADSQEQGRWLKADLKRAAAIIAPLQGLDPEIVELALRRYNFNVTPLSEQVAAQQQQIADVFHE LKLIPKPIRVADALPAVRVAQKQP
Specific function: Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein ssuA/tauA family [H]
Homologues:
Organism=Escherichia coli, GI87081803, Length=304, Percent_Identity=47.6973684210526, Blast_Score=262, Evalue=2e-71, Organism=Escherichia coli, GI87081727, Length=212, Percent_Identity=28.7735849056604, Blast_Score=68, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010067 - InterPro: IPR015168 - InterPro: IPR001638 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 37088; Mature: 36957
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSDSSSSSRWRRLPQSARRHLLQAFGAAAGAAALGTWPLARAQSSGAAREPLRVGYQK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHCCCCCCCCCHHHHCCCC SASLFVLQKAQGSLEKKLAPLGVGVKWIEFPAGPQLLEGLNVGSVDIGHVGEAPPIFAQA CCEEEEEECHHCCHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCEECCCCCCCCCHHHHH AGADFVYIGHDPAAPEAEAIVVPQGSAIRSVAELNGRKVALNKGSNVHYLLVRALEKAGL CCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCC KYADIQPVFLPPADARAAFEKGAVDAWAIWDPFLAAVEKQTGARVLVDGRNGVANNYLFY EEECCCEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE LAERKFVQKNGDVIQALFADSQEQGRWLKADLKRAAAIIAPLQGLDPEIVELALRRYNFN EEHHHHHHCCCCEEHHHHCCCHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC VTPLSEQVAAQQQQIADVFHELKLIPKPIRVADALPAVRVAQKQP CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCC >Mature Secondary Structure SHSDSSSSSRWRRLPQSARRHLLQAFGAAAGAAALGTWPLARAQSSGAAREPLRVGYQK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHCCCCCCCCCHHHHCCCC SASLFVLQKAQGSLEKKLAPLGVGVKWIEFPAGPQLLEGLNVGSVDIGHVGEAPPIFAQA CCEEEEEECHHCCHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCEECCCCCCCCCHHHHH AGADFVYIGHDPAAPEAEAIVVPQGSAIRSVAELNGRKVALNKGSNVHYLLVRALEKAGL CCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCC KYADIQPVFLPPADARAAFEKGAVDAWAIWDPFLAAVEKQTGARVLVDGRNGVANNYLFY EEECCCEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE LAERKFVQKNGDVIQALFADSQEQGRWLKADLKRAAAIIAPLQGLDPEIVELALRRYNFN EEHHHHHHCCCCEEHHHHCCCHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC VTPLSEQVAAQQQQIADVFHELKLIPKPIRVADALPAVRVAQKQP CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10506196; 8905232; 9278503 [H]