| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is ssuA [H]
Identifier: 124265307
GI number: 124265307
Start: 118148
End: 119143
Strand: Direct
Name: ssuA [H]
Synonym: Mpe_A0114
Alternate gene names: 124265307
Gene position: 118148-119143 (Clockwise)
Preceding gene: 124265306
Following gene: 124265308
Centisome position: 2.92
GC content: 70.58
Gene sequence:
>996_bases ATGAGCTTCCATCGACATGCGTTGTTCGCCGGCGTGCTGGCGCTGGCCACCGGGCTGCTGGGGTTCGCGCCGGGGGCGCA CAGCCAGCCGGCCGCACCGAAGGAGATCCGCATCGGCTTCCAGAAGAGCGCCGTCAACCTGGTGATCCTCAAGCAGCAGG GTGCGCTGGAGAAGCGCTTTCCCGACAGCAAGGTGTCGTGGATCGAGTTCCCGGCCGGGCCGCAGCTGCTGGAGGCACTG GCGGTCGGCAGCCTGGAGATCGGTCTGACCGGCGACTCGCCGCCGGTGTTCGCGCAGGCGGCCGGCAAGGACCTGCGCTA CGTCGGCGCCGAGCCGCCCAAGCCGCAGAGTTCGGCCATCCTCGTGAAGCCCGACTCGCCGCTGCGCACGCTGGCCGACC TGAAGGGCAGGAAGGTCGCGTTCCAGAAGGGCTCCAGCGCGCATTACCTCGTGGTGCGCGCGCTGGCGCAGGCCGGGCTG CAGTGGAGCGACATCACGCCGATCTACCTGCCGCCGTCGGACGCGCGTGCCGCCTTCGAGCGCGGCAGCGTCGACGCCTG GGCCATCTGGGACCCCTACTACGCCGCGACCGAGCTCGACATCCAACCGCGCGTGCTGAGCAATGGCGTGGGCCTGTCGG GCAACAACTCCTTCTACCTGGCATCGACCGCGTTCACGCAGAACCACCCGCAAGCGGTGCAGGTCCTGCTCGACGAGCTG ACGCGGGCCGATGCCTACGTGCAGTCGCACCGCAAGGAGTCCGCGCAGTTCATCGCCGACTTCAGCGGCCTGAGCCTGGC GACGGTGCACCTGTTCATTTCGCGCCGCCCGCCATCGCCGGTGAAGCCGCTGTCGCCGGCGCTGGTGGCCGACCAGCAGC GTGTGGCCGATGCCTTCCAGCAGCTCGGGCTGATCCCCAAGCCGGTGGCGGTGGCCGAGATCGTGTGGCAGCCCGGCGCC CCGGGGGCGGCGCGCCTCGCGAACGCCGCCCGCTGA
Upstream 100 bases:
>100_bases GACGTGTTCCACGAGCTCAAGCTGATCCCCAAGCCGATCCGCGTGGCCGACGCGCTGCCCGCGGTGCGCGTCGCGCAGAA GCAGCCCTGAGGTGACGGCG
Downstream 100 bases:
>100_bases GACAACAAGAACGACACGACCGAAGACGAAGGAGAGACGAGCGATGAAGCTGCTCTGGTTCATTCCCACCCACGGCGACT CGCGCTACCTCGGCAGCGCG
Product: sulfonate binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MSFHRHALFAGVLALATGLLGFAPGAHSQPAAPKEIRIGFQKSAVNLVILKQQGALEKRFPDSKVSWIEFPAGPQLLEAL AVGSLEIGLTGDSPPVFAQAAGKDLRYVGAEPPKPQSSAILVKPDSPLRTLADLKGRKVAFQKGSSAHYLVVRALAQAGL QWSDITPIYLPPSDARAAFERGSVDAWAIWDPYYAATELDIQPRVLSNGVGLSGNNSFYLASTAFTQNHPQAVQVLLDEL TRADAYVQSHRKESAQFIADFSGLSLATVHLFISRRPPSPVKPLSPALVADQQRVADAFQQLGLIPKPVAVAEIVWQPGA PGAARLANAAR
Sequences:
>Translated_331_residues MSFHRHALFAGVLALATGLLGFAPGAHSQPAAPKEIRIGFQKSAVNLVILKQQGALEKRFPDSKVSWIEFPAGPQLLEAL AVGSLEIGLTGDSPPVFAQAAGKDLRYVGAEPPKPQSSAILVKPDSPLRTLADLKGRKVAFQKGSSAHYLVVRALAQAGL QWSDITPIYLPPSDARAAFERGSVDAWAIWDPYYAATELDIQPRVLSNGVGLSGNNSFYLASTAFTQNHPQAVQVLLDEL TRADAYVQSHRKESAQFIADFSGLSLATVHLFISRRPPSPVKPLSPALVADQQRVADAFQQLGLIPKPVAVAEIVWQPGA PGAARLANAAR >Mature_330_residues SFHRHALFAGVLALATGLLGFAPGAHSQPAAPKEIRIGFQKSAVNLVILKQQGALEKRFPDSKVSWIEFPAGPQLLEALA VGSLEIGLTGDSPPVFAQAAGKDLRYVGAEPPKPQSSAILVKPDSPLRTLADLKGRKVAFQKGSSAHYLVVRALAQAGLQ WSDITPIYLPPSDARAAFERGSVDAWAIWDPYYAATELDIQPRVLSNGVGLSGNNSFYLASTAFTQNHPQAVQVLLDELT RADAYVQSHRKESAQFIADFSGLSLATVHLFISRRPPSPVKPLSPALVADQQRVADAFQQLGLIPKPVAVAEIVWQPGAP GAARLANAAR
Specific function: Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein [H]
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein ssuA/tauA family [H]
Homologues:
Organism=Escherichia coli, GI87081803, Length=306, Percent_Identity=50.6535947712418, Blast_Score=316, Evalue=1e-87, Organism=Escherichia coli, GI87081727, Length=209, Percent_Identity=26.7942583732057, Blast_Score=66, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010067 - InterPro: IPR015168 - InterPro: IPR001638 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 35343; Mature: 35212
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFHRHALFAGVLALATGLLGFAPGAHSQPAAPKEIRIGFQKSAVNLVILKQQGALEKRF CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEECCCEEEEEEECCCCHHHCC PDSKVSWIEFPAGPQLLEALAVGSLEIGLTGDSPPVFAQAAGKDLRYVGAEPPKPQSSAI CCCCCEEEECCCCHHHHHHHHHCCEEEEECCCCCCEEHHHCCCCEEEECCCCCCCCCCEE LVKPDSPLRTLADLKGRKVAFQKGSSAHYLVVRALAQAGLQWSDITPIYLPPSDARAAFE EECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHH RGSVDAWAIWDPYYAATELDIQPRVLSNGVGLSGNNSFYLASTAFTQNHPQAVQVLLDEL CCCCCEEEEECCCCEEEECCCCCHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH TRADAYVQSHRKESAQFIADFSGLSLATVHLFISRRPPSPVKPLSPALVADQQRVADAFQ HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH QLGLIPKPVAVAEIVWQPGAPGAARLANAAR HCCCCCCCHHHHHEEECCCCCHHHHHHHCCC >Mature Secondary Structure SFHRHALFAGVLALATGLLGFAPGAHSQPAAPKEIRIGFQKSAVNLVILKQQGALEKRF CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEECCCEEEEEEECCCCHHHCC PDSKVSWIEFPAGPQLLEALAVGSLEIGLTGDSPPVFAQAAGKDLRYVGAEPPKPQSSAI CCCCCEEEECCCCHHHHHHHHHCCEEEEECCCCCCEEHHHCCCCEEEECCCCCCCCCCEE LVKPDSPLRTLADLKGRKVAFQKGSSAHYLVVRALAQAGLQWSDITPIYLPPSDARAAFE EECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHH RGSVDAWAIWDPYYAATELDIQPRVLSNGVGLSGNNSFYLASTAFTQNHPQAVQVLLDEL CCCCCEEEEECCCCEEEECCCCCHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH TRADAYVQSHRKESAQFIADFSGLSLATVHLFISRRPPSPVKPLSPALVADQQRVADAFQ HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH QLGLIPKPVAVAEIVWQPGAPGAARLANAAR HCCCCCCCHHHHHEEECCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10506196; 8905232; 9278503 [H]