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The map label for this gene is sigK [H]

Identifier: 124265298

GI number: 124265298

Start: 107874

End: 108602

Strand: Reverse

Name: sigK [H]

Synonym: Mpe_A0105

Alternate gene names: 124265298

Gene position: 108602-107874 (Counterclockwise)

Preceding gene: 124265301

Following gene: 124265297

Centisome position: 2.69

GC content: 73.11

Gene sequence:

>729_bases
ATGCCGTCGCGCCGTTCAACCCCGTTCGCGGCCCTCGCACGTACAAGCCCGAACCGCCGCGATGGCAGACTGAGCAGGCC
CATGCCCGACCCCACGCCCGAACCCTCCGACGACACGCTGATGCAGGCCTTCGCCGGCGGCGACGCGCGCGCCTTCGAAC
GGCTCTACGCACGCCACCACGTCGCGCTCTACCGCTTCGTGCGCAGGCTGCTCGGCAGCGCCTGCGCGGCACAGACCGAC
GAGGTGTTCCAGGACACCTGGCTGCGCGTGATCGACGCGCGCACCCGCTGGGCACCGCAGGGCGCGAGCTTTCGCACCTG
GCTGTTCACGCTGGGCCACCACCGCGCGGTCGATTGCCTGCGCAGGAGCGGCCGGGAGGTATCGGTCGACGCGCCGGGGC
CCGACCCCTGGGAACCCGACGGCGAGCCTTGGGCCCGCTGGCCGGTCGCCCACGGCGCCGACGGGCAGGGCGTCGACGAC
CAGGCCTTCTGGCGTGCGGCCGGCCAGCGCCTGCTCGACTGCCTGGATGGCCTGCCCGCCGCGCAGAAGGCGGTGTTCCT
GCTGCACCACGAGGACGGCCTGTCGCTCGCCGAACTGGCCGCCGCGCTGGAACTGGGTTTCGAGACCGCCAAGAGCCGGC
TGCGCTATGCGATGAGCAAGCTGCGCACCTGCATGGGCGCCTACCTGCCCGGTGCGGGCGTGCTGACCGCGCCCGAGGGG
AGCGCATGA

Upstream 100 bases:

>100_bases
TCATCGTCGACTCCAGTCGGTGAACAGGACAGAGGCGCGCGATCCGTCGCGCGCCCAGGCTGGCTGATACGGCCGGGCCG
CCCGAACGGGGTCAAGACCA

Downstream 100 bases:

>100_bases
ACCGTCCGCACCCGCCCGAGCCGGCCGGTGACGACGACGTGGCGCGCGACGCCCATCTGCGCGCCGCGCTGCGGCATGCG
CCGGACCGCGACGCCCGCCC

Product: DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MPSRRSTPFAALARTSPNRRDGRLSRPMPDPTPEPSDDTLMQAFAGGDARAFERLYARHHVALYRFVRRLLGSACAAQTD
EVFQDTWLRVIDARTRWAPQGASFRTWLFTLGHHRAVDCLRRSGREVSVDAPGPDPWEPDGEPWARWPVAHGADGQGVDD
QAFWRAAGQRLLDCLDGLPAAQKAVFLLHHEDGLSLAELAAALELGFETAKSRLRYAMSKLRTCMGAYLPGAGVLTAPEG
SA

Sequences:

>Translated_242_residues
MPSRRSTPFAALARTSPNRRDGRLSRPMPDPTPEPSDDTLMQAFAGGDARAFERLYARHHVALYRFVRRLLGSACAAQTD
EVFQDTWLRVIDARTRWAPQGASFRTWLFTLGHHRAVDCLRRSGREVSVDAPGPDPWEPDGEPWARWPVAHGADGQGVDD
QAFWRAAGQRLLDCLDGLPAAQKAVFLLHHEDGLSLAELAAALELGFETAKSRLRYAMSKLRTCMGAYLPGAGVLTAPEG
SA
>Mature_241_residues
PSRRSTPFAALARTSPNRRDGRLSRPMPDPTPEPSDDTLMQAFAGGDARAFERLYARHHVALYRFVRRLLGSACAAQTDE
VFQDTWLRVIDARTRWAPQGASFRTWLFTLGHHRAVDCLRRSGREVSVDAPGPDPWEPDGEPWARWPVAHGADGQGVDDQ
AFWRAAGQRLLDCLDGLPAAQKAVFLLHHEDGLSLAELAAALELGFETAKSRLRYAMSKLRTCMGAYLPGAGVLTAPEGS
A

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 26646; Mature: 26515

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSRRSTPFAALARTSPNRRDGRLSRPMPDPTPEPSDDTLMQAFAGGDARAFERLYARHH
CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
VALYRFVRRLLGSACAAQTDEVFQDTWLRVIDARTRWAPQGASFRTWLFTLGHHRAVDCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHH
RRSGREVSVDAPGPDPWEPDGEPWARWPVAHGADGQGVDDQAFWRAAGQRLLDCLDGLPA
HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCH
AQKAVFLLHHEDGLSLAELAAALELGFETAKSRLRYAMSKLRTCMGAYLPGAGVLTAPEG
HHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
SA
CC
>Mature Secondary Structure 
PSRRSTPFAALARTSPNRRDGRLSRPMPDPTPEPSDDTLMQAFAGGDARAFERLYARHH
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
VALYRFVRRLLGSACAAQTDEVFQDTWLRVIDARTRWAPQGASFRTWLFTLGHHRAVDCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHH
RRSGREVSVDAPGPDPWEPDGEPWARWPVAHGADGQGVDDQAFWRAAGQRLLDCLDGLPA
HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCH
AQKAVFLLHHEDGLSLAELAAALELGFETAKSRLRYAMSKLRTCMGAYLPGAGVLTAPEG
HHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
SA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA