| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
Click here to switch to the map view.
The map label for this gene is 124021928
Identifier: 124021928
GI number: 124021928
Start: 231347
End: 232582
Strand: Reverse
Name: 124021928
Synonym: P9303_02151
Alternate gene names: NA
Gene position: 232582-231347 (Counterclockwise)
Preceding gene: 124021929
Following gene: 124021926
Centisome position: 8.67
GC content: 54.77
Gene sequence:
>1236_bases GTGAGTCCATTCCCCTGTTTGCGAGCCCATCAACGCAACATCTTTCTGACAGCCTCTGGCATCAGTACAGCAGGCTCGTT CGCTGGAATGACTGCAAAAGGCTGGATCCTCATGGACGGCACCAACAATCCAATGTTGCTTGCCGCCCACTTCGCCGCCC TTTCCCTGCCAACCCTGCTGGTCAGTGGAGCAGCAGGTGCCTACACAGACCGATTCGGCTGTGAACGGGTTCTTGTGCAA GCCCAGTGGGGCCTTTTAGCAGCTGCGTTACTGGGAGCAGTGGCCATTCCTCTGATGACAGGAACCGCGCTCGTAACAAT GCTATTAACCAGCACGTTGCTTGTCGGGATAGCGAGTGCTTACGAACTCACTGCCCGCAATAAATACTGCGCCCTATTGA TCGACGAGCCCAATCAACTGGCCCCCTATCTCTCTAGTTTTGCGGTTGTGTTCAACGTAGGCAAACTCCTTGGGCCTCCC ATAGGAGGATGGTTACTGGTCATCACAGGACCTGCTGCTGCTCTCAGCATTGATGCCGCGAGTTACTTGCTACCGATCGC CAGTCTCCTCTGGTTACTAGATCCAAACCGAAGCCAAGAACAACGCAGCGTTCCGGGTAAGCAATCAACAATGCTCTATG CATGGCACAACAGCGGCTCTTCGCTTCGACATGTGCTGGGCTTCACCGCAACACTCTGCTTGGTAGGTTTTTTCCACCCT GGTCTAGCCCCTCTAATCGCCGACCAGGTATTGGGTTCAGATCCAAGAGATCTTGGAGTGTTCACCAGCGTGCTTGCAGC AGGGAGCATTGCTGGGGGGGTGGTACTACAACGCAATAGCCAACGATTCTGTAGACGCCCATTTCTGACTCTGAGTGGGT TCGCTCTCATCACTGCCATCGCCCAATTGGGAATGGCTCAAACTGAAAACACGCCACTAGCATTCAGCCTCACAATGACC CTGCTGATTGGAGCTGGTACTGCAGGCCTATTGAGCAGCTGCAACATGATCACCCAAGTGGGGTCCCCTCAGGTCTTGCG TGGGCGCATGGCAGGGCTAAGTCAAATCGCCTTCCTTGGGGGAGGAGGGCTAAGTGGCCTTCTTGCCGCTCAGATGGTGA TTTCAACGAGCTTATCCACGACCTTCGCCACCGCAGGTGGAATCGGACTTGGCCTAGCCCTCTGGGGATTCTGGCAAAAA GGCAGAACCGTACTAGAGGAGGTCAGATCAGCTTGA
Upstream 100 bases:
>100_bases GAACGATGGTTCCTGTCTTCATTACCGGCTCTGATGTCTATGACCTCACCGGCCAGCTGGTGGACACCAACGCCATGGCG GTCACAGCCCAGACGTCTCA
Downstream 100 bases:
>100_bases TGCCTTTAAGAACCTTGGTTAGTGCGAATGCCGCCACCAAGCCAACTGCGACGAACACCAAATAAAAAACGACGCCCATG TGCAACAAATCAGGTGAACA
Product: major facilitator superfamily multidrug-efflux transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Transporter; Facilitator Superfamily Multidrug-Efflux Transporter; Facilitator Superfamily Permease; Arabinose Efflux Permease; Macrolide-Efflux Protein; Permeases Of Facilitator Superfamily
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MSPFPCLRAHQRNIFLTASGISTAGSFAGMTAKGWILMDGTNNPMLLAAHFAALSLPTLLVSGAAGAYTDRFGCERVLVQ AQWGLLAAALLGAVAIPLMTGTALVTMLLTSTLLVGIASAYELTARNKYCALLIDEPNQLAPYLSSFAVVFNVGKLLGPP IGGWLLVITGPAAALSIDAASYLLPIASLLWLLDPNRSQEQRSVPGKQSTMLYAWHNSGSSLRHVLGFTATLCLVGFFHP GLAPLIADQVLGSDPRDLGVFTSVLAAGSIAGGVVLQRNSQRFCRRPFLTLSGFALITAIAQLGMAQTENTPLAFSLTMT LLIGAGTAGLLSSCNMITQVGSPQVLRGRMAGLSQIAFLGGGGLSGLLAAQMVISTSLSTTFATAGGIGLGLALWGFWQK GRTVLEEVRSA
Sequences:
>Translated_411_residues MSPFPCLRAHQRNIFLTASGISTAGSFAGMTAKGWILMDGTNNPMLLAAHFAALSLPTLLVSGAAGAYTDRFGCERVLVQ AQWGLLAAALLGAVAIPLMTGTALVTMLLTSTLLVGIASAYELTARNKYCALLIDEPNQLAPYLSSFAVVFNVGKLLGPP IGGWLLVITGPAAALSIDAASYLLPIASLLWLLDPNRSQEQRSVPGKQSTMLYAWHNSGSSLRHVLGFTATLCLVGFFHP GLAPLIADQVLGSDPRDLGVFTSVLAAGSIAGGVVLQRNSQRFCRRPFLTLSGFALITAIAQLGMAQTENTPLAFSLTMT LLIGAGTAGLLSSCNMITQVGSPQVLRGRMAGLSQIAFLGGGGLSGLLAAQMVISTSLSTTFATAGGIGLGLALWGFWQK GRTVLEEVRSA >Mature_410_residues SPFPCLRAHQRNIFLTASGISTAGSFAGMTAKGWILMDGTNNPMLLAAHFAALSLPTLLVSGAAGAYTDRFGCERVLVQA QWGLLAAALLGAVAIPLMTGTALVTMLLTSTLLVGIASAYELTARNKYCALLIDEPNQLAPYLSSFAVVFNVGKLLGPPI GGWLLVITGPAAALSIDAASYLLPIASLLWLLDPNRSQEQRSVPGKQSTMLYAWHNSGSSLRHVLGFTATLCLVGFFHPG LAPLIADQVLGSDPRDLGVFTSVLAAGSIAGGVVLQRNSQRFCRRPFLTLSGFALITAIAQLGMAQTENTPLAFSLTMTL LIGAGTAGLLSSCNMITQVGSPQVLRGRMAGLSQIAFLGGGGLSGLLAAQMVISTSLSTTFATAGGIGLGLALWGFWQKG RTVLEEVRSA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42739; Mature: 42607
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPFPCLRAHQRNIFLTASGISTAGSFAGMTAKGWILMDGTNNPMLLAAHFAALSLPTLL CCCCCCCHHCCCCEEEEECCCCCCCCCCCCEECCEEEEECCCCCEEEEHHHHHHHHHHHH VSGAAGAYTDRFGCERVLVQAQWGLLAAALLGAVAIPLMTGTALVTMLLTSTLLVGIASA HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YELTARNKYCALLIDEPNQLAPYLSSFAVVFNVGKLLGPPIGGWLLVITGPAAALSIDAA HHEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEHHHH SYLLPIASLLWLLDPNRSQEQRSVPGKQSTMLYAWHNSGSSLRHVLGFTATLCLVGFFHP HHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC GLAPLIADQVLGSDPRDLGVFTSVLAAGSIAGGVVLQRNSQRFCRRPFLTLSGFALITAI CHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHH AQLGMAQTENTPLAFSLTMTLLIGAGTAGLLSSCNMITQVGSPQVLRGRMAGLSQIAFLG HHHCCCCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCHHHEEEEC GGGLSGLLAAQMVISTSLSTTFATAGGIGLGLALWGFWQKGRTVLEEVRSA CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SPFPCLRAHQRNIFLTASGISTAGSFAGMTAKGWILMDGTNNPMLLAAHFAALSLPTLL CCCCCCHHCCCCEEEEECCCCCCCCCCCCEECCEEEEECCCCCEEEEHHHHHHHHHHHH VSGAAGAYTDRFGCERVLVQAQWGLLAAALLGAVAIPLMTGTALVTMLLTSTLLVGIASA HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YELTARNKYCALLIDEPNQLAPYLSSFAVVFNVGKLLGPPIGGWLLVITGPAAALSIDAA HHEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEHHHH SYLLPIASLLWLLDPNRSQEQRSVPGKQSTMLYAWHNSGSSLRHVLGFTATLCLVGFFHP HHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC GLAPLIADQVLGSDPRDLGVFTSVLAAGSIAGGVVLQRNSQRFCRRPFLTLSGFALITAI CHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHH AQLGMAQTENTPLAFSLTMTLLIGAGTAGLLSSCNMITQVGSPQVLRGRMAGLSQIAFLG HHHCCCCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCHHHEEEEC GGGLSGLLAAQMVISTSLSTTFATAGGIGLGLALWGFWQKGRTVLEEVRSA CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA