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The map label for this gene is smpB

Identifier: 124021905

GI number: 124021905

Start: 211205

End: 211702

Strand: Reverse

Name: smpB

Synonym: P9303_01921

Alternate gene names: 124021905

Gene position: 211702-211205 (Counterclockwise)

Preceding gene: 124021913

Following gene: 124021902

Centisome position: 7.89

GC content: 55.82

Gene sequence:

>498_bases
ATGGCCAAGGGAGGAAACAAAAAAGCGACTGCTGCTGCTCGAGCCGCGGCCAACCGTCTGCTCGCGGACAACCGTCTGGC
AAGGCATCAATACGAGATCCTCGACACCCTTGAAACTGGCATTGAGTTGGTGGGAACCGAAGTCAAGTCAATCCGGGCCG
GCCAAGCCAATCTCCGCGATGGCTTCTGCCTGATTCGCAAGGGCGAACTACAGCTCCACAACGTTCACATCTCCCCTCAT
AGCCATGCCGGCAGCTACTTCAATCACGATCCACTACGAACACGCAAACTGCTCGCGCACCGCCGTGAGATCGACAAACT
TCGCGGCCAACTCGACAGAAAAGGGCTCACCCTGATTCCCCTCAACCTTCATCTCAAGGGTTCATGGATCAAACTCACGA
TTGGGCTGGGCAAAGGTCGCAAGCTGCACGACAAACGCCAAGAGGAGAAACGAAAACAAGCTGATCGAGAAGTGAAGTCC
GCTCTGGCGCGCTACTGA

Upstream 100 bases:

>100_bases
CTGGCGGCTGGGAATCAGCTCGGCCAGCACTGGAAGACACAATCGCCATGTTGGAAGAGTACCGATCCCTGGATAGGGTC
GAAAGCATCGGTAAACGCAG

Downstream 100 bases:

>100_bases
TCAGCCAGGGGGGGTAATGAGGCTGAACAAAGTTTTCTTTCGCCGAAGCAAGAGGCGAGGCAATGTCGATGTTCGAGAAG
GGTGTTCTGACCGACCAAGG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MAKGGNKKATAAARAAANRLLADNRLARHQYEILDTLETGIELVGTEVKSIRAGQANLRDGFCLIRKGELQLHNVHISPH
SHAGSYFNHDPLRTRKLLAHRREIDKLRGQLDRKGLTLIPLNLHLKGSWIKLTIGLGKGRKLHDKRQEEKRKQADREVKS
ALARY

Sequences:

>Translated_165_residues
MAKGGNKKATAAARAAANRLLADNRLARHQYEILDTLETGIELVGTEVKSIRAGQANLRDGFCLIRKGELQLHNVHISPH
SHAGSYFNHDPLRTRKLLAHRREIDKLRGQLDRKGLTLIPLNLHLKGSWIKLTIGLGKGRKLHDKRQEEKRKQADREVKS
ALARY
>Mature_164_residues
AKGGNKKATAAARAAANRLLADNRLARHQYEILDTLETGIELVGTEVKSIRAGQANLRDGFCLIRKGELQLHNVHISPHS
HAGSYFNHDPLRTRKLLAHRREIDKLRGQLDRKGLTLIPLNLHLKGSWIKLTIGLGKGRKLHDKRQEEKRKQADREVKSA
LARY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=138, Percent_Identity=44.9275362318841, Blast_Score=128, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_PROM3 (A2C637)

Other databases:

- EMBL:   CP000554
- RefSeq:   YP_001016212.1
- ProteinModelPortal:   A2C637
- SMR:   A2C637
- STRING:   A2C637
- GeneID:   4775948
- GenomeReviews:   CP000554_GR
- KEGG:   pmf:P9303_01921
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18629; Mature: 18498

Theoretical pI: Translated: 11.19; Mature: 11.19

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGGNKKATAAARAAANRLLADNRLARHQYEILDTLETGIELVGTEVKSIRAGQANLRD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GFCLIRKGELQLHNVHISPHSHAGSYFNHDPLRTRKLLAHRREIDKLRGQLDRKGLTLIP
CEEEEEECCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
LNLHLKGSWIKLTIGLGKGRKLHDKRQEEKRKQADREVKSALARY
EEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKGGNKKATAAARAAANRLLADNRLARHQYEILDTLETGIELVGTEVKSIRAGQANLRD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GFCLIRKGELQLHNVHISPHSHAGSYFNHDPLRTRKLLAHRREIDKLRGQLDRKGLTLIP
CEEEEEECCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
LNLHLKGSWIKLTIGLGKGRKLHDKRQEEKRKQADREVKSALARY
EEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA