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The map label for this gene is psbD [H]

Identifier: 124026313

GI number: 124026313

Start: 1313889

End: 1314965

Strand: Direct

Name: psbD [H]

Synonym: NATL1_16071

Alternate gene names: 124026313

Gene position: 1313889-1314965 (Clockwise)

Preceding gene: 124026310

Following gene: 124026314

Centisome position: 70.46

GC content: 44.38

Gene sequence:

>1077_bases
ATGACGATCGCTGTTGGAAGCGCAACAGAACGAGGTTGGTTTGACGCCCTCGATGACTGGTTAAAGCGCGACCGATTCGT
ATTTGTTGGTTGGTCTGGACTACTACTCTTCCCTACGGCTTTCCTAGCTATTGGTGGATGGTTTACAGGTACAACCTTCG
TTTCTTCCTGGTACACCCATGGTGTAGCCAGTTCTTACCTTGAGGGATGCAATTTCCTCACAGCCGCTGTTAGTACTCCT
GGCGATGCCATGGGTCACAGTCTTCTATTCCTTTGGGGACCAGAAGCTCAGGGCGATTTAACACGTTGGTTCCAACTTGG
TGGCCTTTGGAATTTCGTTGCTCTTCACGGCGCGTTTAGTCTTATCGGCTTCATGCTTCGTCAGTTCGAAATTGCAAGAC
TAGTTGGTATCCGTCCATATAACGCACTTGCTTTCTCAGCAGTTATTGCAGTATTTACTGCTTGCTTCCTTATCTATCCA
TTAGGACAGCACAGTTGGTTTTTCGCTCCTTCTTTTGGAGTTGCAGCAATATTCCGTTTCATCCTCTTCATTCAAGGATT
CCACAACATTACGCTTAACCCATTCCACATGATGGGAGTAGCAGGAATTCTTGGTGGTGCTCTTCTTTGTGCTATTCACG
GTGCAACAGTTCAGAACACTCTTTATGAAGACTCAAGTGTTTACTCTGAAGGTAAGACTCAGAGTTCAACATTTAGAGGT
TTCGATCCAGTTCAAGAAGAAGAAACTTACTCATTTATTACAGCAAACCGTTTCTGGAGTCAGATTTTCGGAATTGCTTT
CTCAAATAAGCGTTTCCTTCACTTCTTGATGCTCTTCGTACCAGTAACAGGTATGTGGGCTGCATCAATTGGAATTGTTG
GATTAGCTCTAAACCTTCGTGCTTACGACTTTGTTAGCCAAGAAATCAGAGCTGCTGAAGATCCTGAATTCGAAACTTTC
TACACAAAAAATATCCTTCTTAATGAAGGTATGCGTGCATGGATGTCTTCTGTAGACCAACCACACGAAAACTTTGTATT
CCCTGAGGAGGTACTCCCACGTGGAAACGCCCTTTAA

Upstream 100 bases:

>100_bases
TTCAATACAAGGGATTTCATCAAGTTAAAGATTTACCCACAAACCCCGTCATCGTTGTTAAAGTCCTCGACGTATACAAA
AGCTCAGCAACGCTCCTCCC

Downstream 100 bases:

>100_bases
TAGTTTACTCAACGCTCCTAATCAAAGCCTTGAAGAGACTGGTTACGCCTGGTATGTAGGAAATGCAAGGCTAATCAATC
TTTCAGGAAGACTTTTAGGT

Product: photosystem II PsbD protein (D2)

Products: NA

Alternate protein names: PSII D2 protein; Photosystem Q(A) protein [H]

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MTIAVGSATERGWFDALDDWLKRDRFVFVGWSGLLLFPTAFLAIGGWFTGTTFVSSWYTHGVASSYLEGCNFLTAAVSTP
GDAMGHSLLFLWGPEAQGDLTRWFQLGGLWNFVALHGAFSLIGFMLRQFEIARLVGIRPYNALAFSAVIAVFTACFLIYP
LGQHSWFFAPSFGVAAIFRFILFIQGFHNITLNPFHMMGVAGILGGALLCAIHGATVQNTLYEDSSVYSEGKTQSSTFRG
FDPVQEEETYSFITANRFWSQIFGIAFSNKRFLHFLMLFVPVTGMWAASIGIVGLALNLRAYDFVSQEIRAAEDPEFETF
YTKNILLNEGMRAWMSSVDQPHENFVFPEEVLPRGNAL

Sequences:

>Translated_358_residues
MTIAVGSATERGWFDALDDWLKRDRFVFVGWSGLLLFPTAFLAIGGWFTGTTFVSSWYTHGVASSYLEGCNFLTAAVSTP
GDAMGHSLLFLWGPEAQGDLTRWFQLGGLWNFVALHGAFSLIGFMLRQFEIARLVGIRPYNALAFSAVIAVFTACFLIYP
LGQHSWFFAPSFGVAAIFRFILFIQGFHNITLNPFHMMGVAGILGGALLCAIHGATVQNTLYEDSSVYSEGKTQSSTFRG
FDPVQEEETYSFITANRFWSQIFGIAFSNKRFLHFLMLFVPVTGMWAASIGIVGLALNLRAYDFVSQEIRAAEDPEFETF
YTKNILLNEGMRAWMSSVDQPHENFVFPEEVLPRGNAL
>Mature_357_residues
TIAVGSATERGWFDALDDWLKRDRFVFVGWSGLLLFPTAFLAIGGWFTGTTFVSSWYTHGVASSYLEGCNFLTAAVSTPG
DAMGHSLLFLWGPEAQGDLTRWFQLGGLWNFVALHGAFSLIGFMLRQFEIARLVGIRPYNALAFSAVIAVFTACFLIYPL
GQHSWFFAPSFGVAAIFRFILFIQGFHNITLNPFHMMGVAGILGGALLCAIHGATVQNTLYEDSSVYSEGKTQSSTFRGF
DPVQEEETYSFITANRFWSQIFGIAFSNKRFLHFLMLFVPVTGMWAASIGIVGLALNLRAYDFVSQEIRAAEDPEFETFY
TKNILLNEGMRAWMSSVDQPHENFVFPEEVLPRGNAL

Specific function: One of the two reaction center proteins of photosystem II (PSII), D2 is needed for assembly of a stable PSII complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005868 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 39929; Mature: 39798

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIAVGSATERGWFDALDDWLKRDRFVFVGWSGLLLFPTAFLAIGGWFTGTTFVSSWYTH
CEEEECCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
GVASSYLEGCNFLTAAVSTPGDAMGHSLLFLWGPEAQGDLTRWFQLGGLWNFVALHGAFS
HHHHHHHHCCHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHH
LIGFMLRQFEIARLVGIRPYNALAFSAVIAVFTACFLIYPLGQHSWFFAPSFGVAAIFRF
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHH
ILFIQGFHNITLNPFHMMGVAGILGGALLCAIHGATVQNTLYEDSSVYSEGKTQSSTFRG
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCCCCCCCCC
FDPVQEEETYSFITANRFWSQIFGIAFSNKRFLHFLMLFVPVTGMWAASIGIVGLALNLR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYDFVSQEIRAAEDPEFETFYTKNILLNEGMRAWMSSVDQPHENFVFPEEVLPRGNAL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHCCCCCCC
>Mature Secondary Structure 
TIAVGSATERGWFDALDDWLKRDRFVFVGWSGLLLFPTAFLAIGGWFTGTTFVSSWYTH
EEEECCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
GVASSYLEGCNFLTAAVSTPGDAMGHSLLFLWGPEAQGDLTRWFQLGGLWNFVALHGAFS
HHHHHHHHCCHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHH
LIGFMLRQFEIARLVGIRPYNALAFSAVIAVFTACFLIYPLGQHSWFFAPSFGVAAIFRF
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHH
ILFIQGFHNITLNPFHMMGVAGILGGALLCAIHGATVQNTLYEDSSVYSEGKTQSSTFRG
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCCCCCCCCC
FDPVQEEETYSFITANRFWSQIFGIAFSNKRFLHFLMLFVPVTGMWAASIGIVGLALNLR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYDFVSQEIRAAEDPEFETFYTKNILLNEGMRAWMSSVDQPHENFVFPEEVLPRGNAL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]