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The map label for this gene is psbC [H]

Identifier: 124026314

GI number: 124026314

Start: 1314949

End: 1316331

Strand: Direct

Name: psbC [H]

Synonym: NATL1_16081

Alternate gene names: 124026314

Gene position: 1314949-1316331 (Clockwise)

Preceding gene: 124026313

Following gene: 124026316

Centisome position: 70.52

GC content: 44.54

Gene sequence:

>1383_bases
GTGGAAACGCCCTTTAATAGTTTACTCAACGCTCCTAATCAAAGCCTTGAAGAGACTGGTTACGCCTGGTATGTAGGAAA
TGCAAGGCTAATCAATCTTTCAGGAAGACTTTTAGGTGCTCACATTGCTCACGCAGGACTAATTGTGTTCTGGGCAGGCG
CGATGATGCTTTTCGAAGTAAGTCACTTCACCATGGATAAACCCATGTGGGAACAAGGCTTAATTTGTATGCCTCACGTA
GCCATGTTTGGATACGGCATTGGTCCAGGTGGAGAAGTCACTGATGTATGGCCTTTCTTCATTGCTGGTGTTATTCACCT
AGTTGCATCTGGAATCCTTGGCTTTGGTGGTGTTTTTCACTCCCTTGCAGGACCAGAGAAACTTGAAGAAGATTTCCCAT
TCTTCTCCACTGACTGGAGAGATAAAAACCAAATGACCAATATTCTTGGTTTTCATTTGGTTGTTCTTGGTGTTGGAGCT
CTTCTATGGTCCATTAACTGGATGTATATAGGTGGTGCATACGACACTTGGGCTCCAGGTGGAGGAGAAGTTAGGTTGAT
CAACCCAACACTCGATCCAAGAATTATTTTTGGATATCTGCTATCAACCCCTTGGGGTGGTGGTGGTTGGATGGTTGGTG
TTAACTCAATGGAAGATATTGTCGGAGGACATGTTTACCTGGGAGTGATTGAAATAATTGGTGGTCTTTTCCATATCTTC
ACTCAGCCTTATGGGTGGGCAAGGAGAGCCTTTATCTGGAACGGTGAAGGACTTCTAAGTTATGCATTAGGTGGAATCTG
TGTCGCAAGTTTTGTTGCCTCATGTTTCATCTGGTTTAACAACACTGCTTATCCATCTGAGTTCTACGGCCCAACAAACG
CTGAAGCTTCTCAGGCCCAAAGTTTTACATTCCTGGTTCGTGACCAACGAATTGGAGCAAATGTAGGTTCAACAATGGGT
CCTACTGGTTTAGGAAAATACCTAATGCGTTCTCCTACTGGTGAAATCATCTTTGGTGGAGAAACTATGCGTTTTTGGGA
TTTCCGAGGACCATGGCTTGAGCCTCTTAGAGGACCAAATGGTCTCAGCCTTGAGAAGATTCAAAATGATATTCAGCCTT
GGCAAGTTCGCCGTGCTGCTGAATACATGACACATGCTCCAAACGCTTCTATCAACTCAGTTGGTGGAATCATTACTGAG
CCTAACGCTGTTAACTTTGTTAACTTGCGTCAATGGCTAGCTGGTGCTCAATTCTTCCTTGGTTGGTTTACTTTTGTAGG
TCATCTTTGGCATGCTGGTCGTGCTAGAGCCGCTGCAGCTGGATTTGAAAAAGGTATCAGTCGTTCACAAGAGCCTGCTC
TTTCAATGCCTGATCTAGATTAG

Upstream 100 bases:

>100_bases
TACACAAAAAATATCCTTCTTAATGAAGGTATGCGTGCATGGATGTCTTCTGTAGACCAACCACACGAAAACTTTGTATT
CCCTGAGGAGGTACTCCCAC

Downstream 100 bases:

>100_bases
ATCTATCAATAAATAAAAAAAGCCCTCTTAATAGAGGGCTTTTTTTATGGTTAAAAATATTTGATCTTAAAATTATTTAT
CTATCTAAAAGCAAGCGAGA

Product: photosystem II PsbC protein (CP43)

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
METPFNSLLNAPNQSLEETGYAWYVGNARLINLSGRLLGAHIAHAGLIVFWAGAMMLFEVSHFTMDKPMWEQGLICMPHV
AMFGYGIGPGGEVTDVWPFFIAGVIHLVASGILGFGGVFHSLAGPEKLEEDFPFFSTDWRDKNQMTNILGFHLVVLGVGA
LLWSINWMYIGGAYDTWAPGGGEVRLINPTLDPRIIFGYLLSTPWGGGGWMVGVNSMEDIVGGHVYLGVIEIIGGLFHIF
TQPYGWARRAFIWNGEGLLSYALGGICVASFVASCFIWFNNTAYPSEFYGPTNAEASQAQSFTFLVRDQRIGANVGSTMG
PTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLEKIQNDIQPWQVRRAAEYMTHAPNASINSVGGIITE
PNAVNFVNLRQWLAGAQFFLGWFTFVGHLWHAGRARAAAAGFEKGISRSQEPALSMPDLD

Sequences:

>Translated_460_residues
METPFNSLLNAPNQSLEETGYAWYVGNARLINLSGRLLGAHIAHAGLIVFWAGAMMLFEVSHFTMDKPMWEQGLICMPHV
AMFGYGIGPGGEVTDVWPFFIAGVIHLVASGILGFGGVFHSLAGPEKLEEDFPFFSTDWRDKNQMTNILGFHLVVLGVGA
LLWSINWMYIGGAYDTWAPGGGEVRLINPTLDPRIIFGYLLSTPWGGGGWMVGVNSMEDIVGGHVYLGVIEIIGGLFHIF
TQPYGWARRAFIWNGEGLLSYALGGICVASFVASCFIWFNNTAYPSEFYGPTNAEASQAQSFTFLVRDQRIGANVGSTMG
PTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLEKIQNDIQPWQVRRAAEYMTHAPNASINSVGGIITE
PNAVNFVNLRQWLAGAQFFLGWFTFVGHLWHAGRARAAAAGFEKGISRSQEPALSMPDLD
>Mature_460_residues
METPFNSLLNAPNQSLEETGYAWYVGNARLINLSGRLLGAHIAHAGLIVFWAGAMMLFEVSHFTMDKPMWEQGLICMPHV
AMFGYGIGPGGEVTDVWPFFIAGVIHLVASGILGFGGVFHSLAGPEKLEEDFPFFSTDWRDKNQMTNILGFHLVVLGVGA
LLWSINWMYIGGAYDTWAPGGGEVRLINPTLDPRIIFGYLLSTPWGGGGWMVGVNSMEDIVGGHVYLGVIEIIGGLFHIF
TQPYGWARRAFIWNGEGLLSYALGGICVASFVASCFIWFNNTAYPSEFYGPTNAEASQAQSFTFLVRDQRIGANVGSTMG
PTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLEKIQNDIQPWQVRRAAEYMTHAPNASINSVGGIITE
PNAVNFVNLRQWLAGAQFFLGWFTFVGHLWHAGRARAAAAGFEKGISRSQEPALSMPDLD

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 50493; Mature: 50493

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METPFNSLLNAPNQSLEETGYAWYVGNARLINLSGRLLGAHIAHAGLIVFWAGAMMLFEV
CCCCHHHHHCCCCCHHHHCCCEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
SHFTMDKPMWEQGLICMPHVAMFGYGIGPGGEVTDVWPFFIAGVIHLVASGILGFGGVFH
HHHHCCCCHHHCCCEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLAGPEKLEEDFPFFSTDWRDKNQMTNILGFHLVVLGVGALLWSINWMYIGGAYDTWAPG
HCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCC
GGEVRLINPTLDPRIIFGYLLSTPWGGGGWMVGVNSMEDIVGGHVYLGVIEIIGGLFHIF
CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHHHHHH
TQPYGWARRAFIWNGEGLLSYALGGICVASFVASCFIWFNNTAYPSEFYGPTNAEASQAQ
HCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHC
SFTFLVRDQRIGANVGSTMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPN
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHHCCCCC
GLSLEKIQNDIQPWQVRRAAEYMTHAPNASINSVGGIITEPNAVNFVNLRQWLAGAQFFL
CCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
GWFTFVGHLWHAGRARAAAAGFEKGISRSQEPALSMPDLD
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
METPFNSLLNAPNQSLEETGYAWYVGNARLINLSGRLLGAHIAHAGLIVFWAGAMMLFEV
CCCCHHHHHCCCCCHHHHCCCEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
SHFTMDKPMWEQGLICMPHVAMFGYGIGPGGEVTDVWPFFIAGVIHLVASGILGFGGVFH
HHHHCCCCHHHCCCEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLAGPEKLEEDFPFFSTDWRDKNQMTNILGFHLVVLGVGALLWSINWMYIGGAYDTWAPG
HCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCC
GGEVRLINPTLDPRIIFGYLLSTPWGGGGWMVGVNSMEDIVGGHVYLGVIEIIGGLFHIF
CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHHHHHH
TQPYGWARRAFIWNGEGLLSYALGGICVASFVASCFIWFNNTAYPSEFYGPTNAEASQAQ
HCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHC
SFTFLVRDQRIGANVGSTMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPN
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHHCCCCC
GLSLEKIQNDIQPWQVRRAAEYMTHAPNASINSVGGIITEPNAVNFVNLRQWLAGAQFFL
CCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
GWFTFVGHLWHAGRARAAAAGFEKGISRSQEPALSMPDLD
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA