Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 124026245

GI number: 124026245

Start: 1252780

End: 1253883

Strand: Direct

Name: dppB [H]

Synonym: NATL1_15391

Alternate gene names: 124026245

Gene position: 1252780-1253883 (Clockwise)

Preceding gene: 124026244

Following gene: 124026247

Centisome position: 67.18

GC content: 33.24

Gene sequence:

>1104_bases
TTGGTCTCTAAAAGATATAAGCCAACCAGAATTTTCAAAAGATGGATTAATTATCCTGAAAAACTTAGAGAGAGACTAGT
TTTGTCAACTAAAAAGGCACTTTTCAAATATATCCTTTCAAGATTAACTCTATTGCCAATAATGCTTTGGATCATTTCGA
GCTTAGTTTTTATATTATTAAGAATTGCTCCAGGCGATCCGGTAGATGCAATCCTAGGCACTCGAGCGAATGAATTTGCA
AGGGAAAGCCTAAGAATTAAACTTGGATTAGATAAGCCTCTAATTAATCAATATATTGAATATTTAAATCAATTAATTCA
TGGCAATTTAGGAATCTCATTAAACACACAAGAACCTGTAAAAGTAATTATTTCAAAGGCTCTTCCAGCAAGTTTGGAAT
TAGCTATATTTTCAATATTAATAGCATCATTCGTAGGTTATTTAATTGGTTTTTTAGGAGCAGTTAAGCCAGAAAGCAAA
ATAGATTTTTCAGGAAGGATTTTTGGCATTGGTACCTATGCTCTCCCCCCTTTCTGGGCAGCAATGTTAATTCAAATTAT
CTTCGCTGTTTTTTTAGGTTGGTTACCCATTGGTGGAAGATTACCTCCCGGAGCTATTCCTCCGCCCCCAATCACTGGTT
TCTTACTTTTAGATAGTATTTTAGATAAAAACGTTGAAATCATTTTTAGTTCTATTCAACATTTAATATTACCCTCCGTC
ACTCTAGGGATCTTATTAAGCGGAATATTTAGTCGAGCATTAAGATTAAATCTAGAAGAAGTTTTAAAAAAAGATTACAT
TGAAGCCGCTAAAAGTAGAGGTATAAATAACTCCAGAGTATTAGTTAAACATGCCTTACCAAATACTCTTCTCCCAATAT
TGACAATTACTGGCTTAACAGTTTCTTCTTTAGTTGGTGGAGCACTTTTAATTGAAATAACATTCTCATGGCCTGGAATA
GCTCTTGGACTTCAAGAAGCTATAAATCAAAGAGATTATCCTGTTGTACAAGGAATAGTTGTTGTAATATCTAGCCTTGT
TGTAATGATTAGTGTTTGTATAGATATCGCTATTGCATATATTGATCCAAGGGTTAGTTATTGA

Upstream 100 bases:

>100_bases
AACTAGATGGAGAAAACAGACTAAATAATTTAATAAAAGTTGAAAAACTTGCAGCACAAGGAGGTGCCTACTTACCAATT
TGGCTCGTTAATCCTAAAGC

Downstream 100 bases:

>100_bases
ATATTGATAAGTTGTTCAATTATATTACTGTCTAAGATATGAAACTTAAGCTCGCCTTTAGTTAAATTCGTATTCAAAGG
GACTGTTTTATTCTCTTCTA

Product: putative ABC transporter, oligopeptides

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MVSKRYKPTRIFKRWINYPEKLRERLVLSTKKALFKYILSRLTLLPIMLWIISSLVFILLRIAPGDPVDAILGTRANEFA
RESLRIKLGLDKPLINQYIEYLNQLIHGNLGISLNTQEPVKVIISKALPASLELAIFSILIASFVGYLIGFLGAVKPESK
IDFSGRIFGIGTYALPPFWAAMLIQIIFAVFLGWLPIGGRLPPGAIPPPPITGFLLLDSILDKNVEIIFSSIQHLILPSV
TLGILLSGIFSRALRLNLEEVLKKDYIEAAKSRGINNSRVLVKHALPNTLLPILTITGLTVSSLVGGALLIEITFSWPGI
ALGLQEAINQRDYPVVQGIVVVISSLVVMISVCIDIAIAYIDPRVSY

Sequences:

>Translated_367_residues
MVSKRYKPTRIFKRWINYPEKLRERLVLSTKKALFKYILSRLTLLPIMLWIISSLVFILLRIAPGDPVDAILGTRANEFA
RESLRIKLGLDKPLINQYIEYLNQLIHGNLGISLNTQEPVKVIISKALPASLELAIFSILIASFVGYLIGFLGAVKPESK
IDFSGRIFGIGTYALPPFWAAMLIQIIFAVFLGWLPIGGRLPPGAIPPPPITGFLLLDSILDKNVEIIFSSIQHLILPSV
TLGILLSGIFSRALRLNLEEVLKKDYIEAAKSRGINNSRVLVKHALPNTLLPILTITGLTVSSLVGGALLIEITFSWPGI
ALGLQEAINQRDYPVVQGIVVVISSLVVMISVCIDIAIAYIDPRVSY
>Mature_367_residues
MVSKRYKPTRIFKRWINYPEKLRERLVLSTKKALFKYILSRLTLLPIMLWIISSLVFILLRIAPGDPVDAILGTRANEFA
RESLRIKLGLDKPLINQYIEYLNQLIHGNLGISLNTQEPVKVIISKALPASLELAIFSILIASFVGYLIGFLGAVKPESK
IDFSGRIFGIGTYALPPFWAAMLIQIIFAVFLGWLPIGGRLPPGAIPPPPITGFLLLDSILDKNVEIIFSSIQHLILPSV
TLGILLSGIFSRALRLNLEEVLKKDYIEAAKSRGINNSRVLVKHALPNTLLPILTITGLTVSSLVGGALLIEITFSWPGI
ALGLQEAINQRDYPVVQGIVVVISSLVVMISVCIDIAIAYIDPRVSY

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=34.1246290801187, Blast_Score=218, Evalue=7e-58,
Organism=Escherichia coli, GI1787761, Length=315, Percent_Identity=37.7777777777778, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1787053, Length=334, Percent_Identity=31.1377245508982, Blast_Score=185, Evalue=5e-48,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=30.4477611940298, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=32.967032967033, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1787497, Length=336, Percent_Identity=27.3809523809524, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1788504, Length=377, Percent_Identity=27.0557029177719, Blast_Score=108, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40525; Mature: 40525

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSKRYKPTRIFKRWINYPEKLRERLVLSTKKALFKYILSRLTLLPIMLWIISSLVFILL
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIAPGDPVDAILGTRANEFARESLRIKLGLDKPLINQYIEYLNQLIHGNLGISLNTQEPV
HCCCCCCHHHHHCCCHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCHHH
KVIISKALPASLELAIFSILIASFVGYLIGFLGAVKPESKIDFSGRIFGIGTYALPPFWA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCHHHH
AMLIQIIFAVFLGWLPIGGRLPPGAIPPPPITGFLLLDSILDKNVEIIFSSIQHLILPSV
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
TLGILLSGIFSRALRLNLEEVLKKDYIEAAKSRGINNSRVLVKHALPNTLLPILTITGLT
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEHHCCHHHHHHHHHHHHH
VSSLVGGALLIEITFSWPGIALGLQEAINQRDYPVVQGIVVVISSLVVMISVCIDIAIAY
HHHHHCCEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDPRVSY
HCCCCCC
>Mature Secondary Structure
MVSKRYKPTRIFKRWINYPEKLRERLVLSTKKALFKYILSRLTLLPIMLWIISSLVFILL
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIAPGDPVDAILGTRANEFARESLRIKLGLDKPLINQYIEYLNQLIHGNLGISLNTQEPV
HCCCCCCHHHHHCCCHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCHHH
KVIISKALPASLELAIFSILIASFVGYLIGFLGAVKPESKIDFSGRIFGIGTYALPPFWA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCHHHH
AMLIQIIFAVFLGWLPIGGRLPPGAIPPPPITGFLLLDSILDKNVEIIFSSIQHLILPSV
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
TLGILLSGIFSRALRLNLEEVLKKDYIEAAKSRGINNSRVLVKHALPNTLLPILTITGLT
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEHHCCHHHHHHHHHHHHH
VSSLVGGALLIEITFSWPGIALGLQEAINQRDYPVVQGIVVVISSLVVMISVCIDIAIAY
HHHHHCCEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDPRVSY
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]