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The map label for this gene is yrvN [H]

Identifier: 124024855

GI number: 124024855

Start: 139659

End: 141863

Strand: Direct

Name: yrvN [H]

Synonym: NATL1_01421

Alternate gene names: 124024855

Gene position: 139659-141863 (Clockwise)

Preceding gene: 124024854

Following gene: 124024857

Centisome position: 7.49

GC content: 36.42

Gene sequence:

>2205_bases
TTGTCCAAAGATCTGTTTGCTTTTAATGGTGAACAGCTAATTCAGAATAATGCTCCTTTAGCTGATCGCTTACGGCCTCA
AACACTGGATGAATTTGTTGGTCAAGATCACATTCTTGCTCAAGGACGTTTATTGAGACGTTCAATTGTTGCTGACAAAG
TAGGCAATTTATTGCTTTATGGACCCCCTGGAGTTGGTAAGACTACTTTGGCTAGGATTATCGCCTTAAATACCCTATCT
CACTTTAGTGTCGTAAATGCAGCACTGGCTGGCATCAAGGATTTGAGATCTGAGATAGAGTCGGCAATCGATAGATTAAA
TAAATTTGGTAAACGCACAATTTTATTTATTGATGAGGTTCATAGATTTAATACTGCTCAACAAGATGCCTTATTACCTT
GGGTTGAAAATGGAACTTTGACCCTTATTGGGGCCACAACGGAAAATCCATATTTTGAAGTAAATAAAGCGTTGCTAAGT
AGATCTAGACTATTTCGTTTAAATAGTCTGAATTCAAAAGCATTACATCAATTGCTGCAACGAGCTTTGAATGATAAGAA
GAGGGGATATGGATTGAAATTAATCAATTTAGCTAGTGAAGCTGAGGATCATTTGGTTGATGTGTGTAATGGCGATGCAC
GCGTTCTGCTTAATGCGCTTGAACTTGCTGTAGAGAGCACTATTGCAAATCAAGATACTTCAATCAATATTGATCTCAAG
ATTGCTGAGGATTCAATTCAAGAACGAGCGGTTTTATACGACAAAAAAGGTGATGCTCATTTTGATACTATCAGCGCTTT
TATTAAGTCATTAAGAGGCTCGGATCCTGATGCGGCATTGTTTTGGCTTGCTCGAATGTTGGAGGCTGGAGAAAGTCCAC
GATTCATTTTTAGACGTATGCTCATCGCAGCAGGAGAAGATATTGGTCTTGCTGATCCCAATGCAATTGTCATAGTTGAG
TCATGCGCTGCGGCTTTTGATCGAATAGGTTTGCCAGAGGGTGTTTACCCACTGGCTCAGGCAACCTTGTACTTGGCTTC
AACTGAGAAAAGCAATAGTGTGAAGGCTATTTTTAAGGCAGTTCAGAAAGTTAAAGATTCCCAAAAGCAAAATGTTCCAT
CTCATCTTAAAGATCCAAATCGAGATCAAGAATCTTTTGGAGATGGCATGGGTTACAGGTATCCACATTCATTTTCAAAA
CACTGGGTTCCACAGCAATATTTGCCAGACACTTTGCTAAACGAGATTTTTTGGGAGCCAACTGAACATGGATGGGAAGG
GCAAAGACGATCTCTTTTGAATGAGAGAAGATCTGAACAGTTAGCTTCATTAATTGAAGTTGAGCAACAAAATCCTTTAA
CTATTACATCTGGCAAAGTTGATAATGATTTGGAAAAATGGTTATCTCGCCAAGTTTTGCAGGAGGGGGAACGATTAAAA
AATTTGATGACTAAATTATGGTCCGGCATTACTTGGAAAAAAAATCATAGGGTTTTAGTTTTAGCACCTAGTTCTTTGCT
TTGGTCTTTAAAGCCTTTAAGAGAGGTATCTGAAGGGGGCGTTTTTTTGGCTGTATCAGAGGATAATCATCCCAAGTTAT
TAGCTGAATTAGAAGTTTTAGCGCCTATGGAGCGACCTGTTTTAATTGATTCAAAAGTTGAATCAATTAAAAAATTAGAA
GACAATCTCAAGTTTGAGGTAATTGGAGGAAGGATTCCTTGGAAAGTTTTTTCTGAAACAAATTTCTTTGAATTGTGGCC
GATTCTTACTGAAAAATGTACGGCGAATACAGCATTAAGTTTGATTATAAGTAACCCATGTTCTGGCCCTGCCTTTTCTT
TAAAGGAAAGATTAGAGTTTTATAGTAATAAGAAAAATACTGATTTTTCATTCTTGAGTGATTTAATTTGTAAAGAGGAG
AAGTGGTTAAATAAGCAAGAACATAAAAAGAAATTTATTCTACAATTAGAAAAATTAGGCTGGAATATTTCTTTTGAAGA
ATGGACTGAGTTTGTATATCAAAAAGTTGACAATACTATAATTAAAAGGTGGCTTAATCAGGGAAGTGAGTATCGAGAAA
TTATTCTCAAAAATTGTGAGGAAGAAACATTAATTCGATTGCAAGAATTATTTAAAAGATTGGAAGGCCAGACTATAAAA
CAGAAGCTTATACATACTAAATTTCTTGCTAAGAATAGTAATTAA

Upstream 100 bases:

>100_bases
AGTTATTACGTAGATCAAAAATCTTCAATTTGAAATCATCAAAACAACTTTATAAGTTTTTTTTTGCTTTTAGAGTATCA
AAAATGTTTATTTATTAGCT

Downstream 100 bases:

>100_bases
TCAACGCAAATTATCGGCTTACATGTTATCGAATCTTCATCTAATGCAATTGCATACGTCCATTGATCATAATTTTGTTC
GTAAACTTTTACTTTGTGAC

Product: recombination factor protein RarA/unknown domain fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 734; Mature: 733

Protein sequence:

>734_residues
MSKDLFAFNGEQLIQNNAPLADRLRPQTLDEFVGQDHILAQGRLLRRSIVADKVGNLLLYGPPGVGKTTLARIIALNTLS
HFSVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEVHRFNTAQQDALLPWVENGTLTLIGATTENPYFEVNKALLS
RSRLFRLNSLNSKALHQLLQRALNDKKRGYGLKLINLASEAEDHLVDVCNGDARVLLNALELAVESTIANQDTSINIDLK
IAEDSIQERAVLYDKKGDAHFDTISAFIKSLRGSDPDAALFWLARMLEAGESPRFIFRRMLIAAGEDIGLADPNAIVIVE
SCAAAFDRIGLPEGVYPLAQATLYLASTEKSNSVKAIFKAVQKVKDSQKQNVPSHLKDPNRDQESFGDGMGYRYPHSFSK
HWVPQQYLPDTLLNEIFWEPTEHGWEGQRRSLLNERRSEQLASLIEVEQQNPLTITSGKVDNDLEKWLSRQVLQEGERLK
NLMTKLWSGITWKKNHRVLVLAPSSLLWSLKPLREVSEGGVFLAVSEDNHPKLLAELEVLAPMERPVLIDSKVESIKKLE
DNLKFEVIGGRIPWKVFSETNFFELWPILTEKCTANTALSLIISNPCSGPAFSLKERLEFYSNKKNTDFSFLSDLICKEE
KWLNKQEHKKKFILQLEKLGWNISFEEWTEFVYQKVDNTIIKRWLNQGSEYREIILKNCEEETLIRLQELFKRLEGQTIK
QKLIHTKFLAKNSN

Sequences:

>Translated_734_residues
MSKDLFAFNGEQLIQNNAPLADRLRPQTLDEFVGQDHILAQGRLLRRSIVADKVGNLLLYGPPGVGKTTLARIIALNTLS
HFSVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEVHRFNTAQQDALLPWVENGTLTLIGATTENPYFEVNKALLS
RSRLFRLNSLNSKALHQLLQRALNDKKRGYGLKLINLASEAEDHLVDVCNGDARVLLNALELAVESTIANQDTSINIDLK
IAEDSIQERAVLYDKKGDAHFDTISAFIKSLRGSDPDAALFWLARMLEAGESPRFIFRRMLIAAGEDIGLADPNAIVIVE
SCAAAFDRIGLPEGVYPLAQATLYLASTEKSNSVKAIFKAVQKVKDSQKQNVPSHLKDPNRDQESFGDGMGYRYPHSFSK
HWVPQQYLPDTLLNEIFWEPTEHGWEGQRRSLLNERRSEQLASLIEVEQQNPLTITSGKVDNDLEKWLSRQVLQEGERLK
NLMTKLWSGITWKKNHRVLVLAPSSLLWSLKPLREVSEGGVFLAVSEDNHPKLLAELEVLAPMERPVLIDSKVESIKKLE
DNLKFEVIGGRIPWKVFSETNFFELWPILTEKCTANTALSLIISNPCSGPAFSLKERLEFYSNKKNTDFSFLSDLICKEE
KWLNKQEHKKKFILQLEKLGWNISFEEWTEFVYQKVDNTIIKRWLNQGSEYREIILKNCEEETLIRLQELFKRLEGQTIK
QKLIHTKFLAKNSN
>Mature_733_residues
SKDLFAFNGEQLIQNNAPLADRLRPQTLDEFVGQDHILAQGRLLRRSIVADKVGNLLLYGPPGVGKTTLARIIALNTLSH
FSVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEVHRFNTAQQDALLPWVENGTLTLIGATTENPYFEVNKALLSR
SRLFRLNSLNSKALHQLLQRALNDKKRGYGLKLINLASEAEDHLVDVCNGDARVLLNALELAVESTIANQDTSINIDLKI
AEDSIQERAVLYDKKGDAHFDTISAFIKSLRGSDPDAALFWLARMLEAGESPRFIFRRMLIAAGEDIGLADPNAIVIVES
CAAAFDRIGLPEGVYPLAQATLYLASTEKSNSVKAIFKAVQKVKDSQKQNVPSHLKDPNRDQESFGDGMGYRYPHSFSKH
WVPQQYLPDTLLNEIFWEPTEHGWEGQRRSLLNERRSEQLASLIEVEQQNPLTITSGKVDNDLEKWLSRQVLQEGERLKN
LMTKLWSGITWKKNHRVLVLAPSSLLWSLKPLREVSEGGVFLAVSEDNHPKLLAELEVLAPMERPVLIDSKVESIKKLED
NLKFEVIGGRIPWKVFSETNFFELWPILTEKCTANTALSLIISNPCSGPAFSLKERLEFYSNKKNTDFSFLSDLICKEEK
WLNKQEHKKKFILQLEKLGWNISFEEWTEFVYQKVDNTIIKRWLNQGSEYREIILKNCEEETLIRLQELFKRLEGQTIKQ
KLIHTKFLAKNSN

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=448, Percent_Identity=38.8392857142857, Blast_Score=287, Evalue=2e-77,
Organism=Homo sapiens, GI18426904, Length=448, Percent_Identity=34.8214285714286, Blast_Score=235, Evalue=1e-61,
Organism=Escherichia coli, GI1787119, Length=438, Percent_Identity=41.5525114155251, Blast_Score=339, Evalue=4e-94,
Organism=Escherichia coli, GI1788167, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=37.793427230047, Blast_Score=258, Evalue=3e-69,
Organism=Saccharomyces cerevisiae, GI6324039, Length=286, Percent_Identity=29.020979020979, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 83441; Mature: 83309

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDLFAFNGEQLIQNNAPLADRLRPQTLDEFVGQDHILAQGRLLRRSIVADKVGNLLLY
CCCCCEEECCHHHHHCCCCHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEE
GPPGVGKTTLARIIALNTLSHFSVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHH
HRFNTAQQDALLPWVENGTLTLIGATTENPYFEVNKALLSRSRLFRLNSLNSKALHQLLQ
HHHCCCCCCCCCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RALNDKKRGYGLKLINLASEAEDHLVDVCNGDARVLLNALELAVESTIANQDTSINIDLK
HHHCCHHCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
IAEDSIQERAVLYDKKGDAHFDTISAFIKSLRGSDPDAALFWLARMLEAGESPRFIFRRM
ECHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
LIAAGEDIGLADPNAIVIVESCAAAFDRIGLPEGVYPLAQATLYLASTEKSNSVKAIFKA
HHHCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHEEEEECCCCCHHHHHHHH
VQKVKDSQKQNVPSHLKDPNRDQESFGDGMGYRYPHSFSKHWVPQQYLPDTLLNEIFWEP
HHHHHHHHHCCCCHHCCCCCCCHHHHCCCCCCCCCCCCHHCCCCHHHCCHHHHHHHCCCC
TEHGWEGQRRSLLNERRSEQLASLIEVEQQNPLTITSGKVDNDLEKWLSRQVLQEGERLK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
NLMTKLWSGITWKKNHRVLVLAPSSLLWSLKPLREVSEGGVFLAVSEDNHPKLLAELEVL
HHHHHHHCCCCEECCCEEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
APMERPVLIDSKVESIKKLEDNLKFEVIGGRIPWKVFSETNFFELWPILTEKCTANTALS
CCCCCCEEECHHHHHHHHHHHCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHCCHHHEE
LIISNPCSGPAFSLKERLEFYSNKKNTDFSFLSDLICKEEKWLNKQEHKKKFILQLEKLG
EEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
WNISFEEWTEFVYQKVDNTIIKRWLNQGSEYREIILKNCEEETLIRLQELFKRLEGQTIK
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH
QKLIHTKFLAKNSN
HHHHHHHHHHCCCC
>Mature Secondary Structure 
SKDLFAFNGEQLIQNNAPLADRLRPQTLDEFVGQDHILAQGRLLRRSIVADKVGNLLLY
CCCCEEECCHHHHHCCCCHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEE
GPPGVGKTTLARIIALNTLSHFSVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHH
HRFNTAQQDALLPWVENGTLTLIGATTENPYFEVNKALLSRSRLFRLNSLNSKALHQLLQ
HHHCCCCCCCCCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RALNDKKRGYGLKLINLASEAEDHLVDVCNGDARVLLNALELAVESTIANQDTSINIDLK
HHHCCHHCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
IAEDSIQERAVLYDKKGDAHFDTISAFIKSLRGSDPDAALFWLARMLEAGESPRFIFRRM
ECHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
LIAAGEDIGLADPNAIVIVESCAAAFDRIGLPEGVYPLAQATLYLASTEKSNSVKAIFKA
HHHCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHEEEEECCCCCHHHHHHHH
VQKVKDSQKQNVPSHLKDPNRDQESFGDGMGYRYPHSFSKHWVPQQYLPDTLLNEIFWEP
HHHHHHHHHCCCCHHCCCCCCCHHHHCCCCCCCCCCCCHHCCCCHHHCCHHHHHHHCCCC
TEHGWEGQRRSLLNERRSEQLASLIEVEQQNPLTITSGKVDNDLEKWLSRQVLQEGERLK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
NLMTKLWSGITWKKNHRVLVLAPSSLLWSLKPLREVSEGGVFLAVSEDNHPKLLAELEVL
HHHHHHHCCCCEECCCEEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
APMERPVLIDSKVESIKKLEDNLKFEVIGGRIPWKVFSETNFFELWPILTEKCTANTALS
CCCCCCEEECHHHHHHHHHHHCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHCCHHHEE
LIISNPCSGPAFSLKERLEFYSNKKNTDFSFLSDLICKEEKWLNKQEHKKKFILQLEKLG
EEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
WNISFEEWTEFVYQKVDNTIIKRWLNQGSEYREIILKNCEEETLIRLQELFKRLEGQTIK
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH
QKLIHTKFLAKNSN
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]