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The map label for this gene is rbpD [H]

Identifier: 124024725

GI number: 124024725

Start: 16301

End: 17053

Strand: Direct

Name: rbpD [H]

Synonym: NATL1_00121

Alternate gene names: 124024725

Gene position: 16301-17053 (Clockwise)

Preceding gene: 124024724

Following gene: 124024727

Centisome position: 0.87

GC content: 57.37

Gene sequence:

>753_bases
GTGAGTATTTTTGTCGGCAACTTGCCCTTCCGCGCTGAGCAGGAAGATGTCATGGAATTGTTTTCTCCCTTTGGGGAGGT
GTCAAATTGTTCTTTACCTTTAGAACGAGATACTGGACGCAAAAGAGGTTTTGCTTTTGTTGAGATGGCTGATGAAGCAG
TTGAAGCTTCAGCAATTGAATCTCTTCAAGGTGCTGAGCTCATGGGTCGTCCTTTAAGAATTAACAAAGCTGAACCTAGA
GGGAGTGCTCCCAGAAGAGGCGGCTACGGCGGTGGCGGCGGTGGCGGCTATGGCGGTGGCGGCTATGGCGGTGGTGGTCA
AGGCGGTTACGGCGGTGGCGGCCAAGGCGGTTACGGCGGTGGCGGCCAAGGCGGTTACGGCGGTGGCGGCCAAGGCGGTT
ACGGCGGTGGCGGTCAAGGTGGCTACGGCGGTGGCGGCCAAGGTGGCTACGGCGGTGGCGGTCAAGGTGGCTACGGCGGT
GGCGGTCAAGGTGGCTACGGCGGTGGCGGTCAAGGTGGCTACGGCGGTGGCGGTCAAGGCGGCTACGGCGGTGGCGGTTA
TGGCGGAGGGGGTCAAGCTGATCAATCAGCTCAAGATAGACCTTCTGGAGCCAAAGGTTGGGAAGATCGTAGTCATGGCA
ATGCTTCTCAAGATGTAAATGACTTTGATCAAGGTCGTAGTAGAAGAAGAAGAGGTGCTTCTCCTGAAGGGGGAGCCGAC
TCTACGGCAGATTATGGCGGCGCAGAATCTTAA

Upstream 100 bases:

>100_bases
GCTTTCGGTATTAAAGTGTTTAGTGATAACTCATTTTAGAGTTATTAATTTTGGCTATTTATAGCCTATTAGTTACATTT
TATTTTAAGTCAATTTTCAA

Downstream 100 bases:

>100_bases
AGATTTCGCTTATTGATTTTTATTGCCCAGCATCTTCGAGTTGTTGGGCAATTTTTTTTAAAATAGAAATATCAGCTTTC
TGAGTTTGACATTTTTCACT

Product: RNA recognition motif-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSIFVGNLPFRAEQEDVMELFSPFGEVSNCSLPLERDTGRKRGFAFVEMADEAVEASAIESLQGAELMGRPLRINKAEPR
GSAPRRGGYGGGGGGGYGGGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGG
GGQGGYGGGGQGGYGGGGQGGYGGGGYGGGGQADQSAQDRPSGAKGWEDRSHGNASQDVNDFDQGRSRRRRGASPEGGAD
STADYGGAES

Sequences:

>Translated_250_residues
MSIFVGNLPFRAEQEDVMELFSPFGEVSNCSLPLERDTGRKRGFAFVEMADEAVEASAIESLQGAELMGRPLRINKAEPR
GSAPRRGGYGGGGGGGYGGGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGG
GGQGGYGGGGQGGYGGGGQGGYGGGGYGGGGQADQSAQDRPSGAKGWEDRSHGNASQDVNDFDQGRSRRRRGASPEGGAD
STADYGGAES
>Mature_249_residues
SIFVGNLPFRAEQEDVMELFSPFGEVSNCSLPLERDTGRKRGFAFVEMADEAVEASAIESLQGAELMGRPLRINKAEPRG
SAPRRGGYGGGGGGGYGGGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGG
GQGGYGGGGQGGYGGGGQGGYGGGGYGGGGQADQSAQDRPSGAKGWEDRSHGNASQDVNDFDQGRSRRRRGASPEGGADS
TADYGGAES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=45.4545454545455, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=42.6829268292683, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=42.8571428571429, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 23908; Mature: 23776

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCC
>Mature Secondary Structure 
SIFVGNLPFRAEQEDVMELFSPFGEVSNCSLPLERDTGRKRGFAFVEMADEAVEASAIE
EEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHH
SLQGAELMGRPLRINKAEPRGSAPRRGGYGGGGGGGYGGGGYGGGGQGGYGGGGQGGYGG
HHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQGGYGGGGQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GYGGGGYGGGGQADQSAQDRPSGAKGWEDRSHGNASQDVNDFDQGRSRRRRGASPEGGAD
CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
STADYGGAES
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]