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The map label for this gene is rpl4lp [H]

Identifier: 124028158

GI number: 124028158

Start: 1309402

End: 1310235

Strand: Direct

Name: rpl4lp [H]

Synonym: Hbut_1303

Alternate gene names: 124028158

Gene position: 1309402-1310235 (Clockwise)

Preceding gene: 124028157

Following gene: 124028159

Centisome position: 78.54

GC content: 54.2

Gene sequence:

>834_bases
TTGGCGTCGAAGATAGGCTCAATGATATTCCTGCTTGCGACACAGCCGCCTCGCGTACCAGTATACAACCTAGAGGGCAG
TGTAGCTGAGGAGGTGCAGCTGCCCAGAGTCTTCGGGCTCCCCGTGCGCATAGACCTCATAAGGCGTGCATTCCTTTCGG
AGTTCACAGCAAGACTCCAGCCAAAGGGCAGGGATCCACTAGCTGGTAAGAGGACTACTGCTAGAAGCTTCGGTGTAGGC
CTGGGTATTGCTAGGGTTCCGAGAATACCCGGCCTAGGCAGAGCAGCATTCATAAACTCGGCAGTTGGCGGTCATTTGGC
GCACCCGCCAAGGGTCGAGAAGAAGATACATGAGGAGATAAACAAGAAGGAGAAGAAGCTTGCAACAGCTTCAGCGCTAG
CTGCAACTGCAAGAAAGGAGTTCGTAGAGAAGCGTGGCCACAGGTTTCCGGCACAGACAGTCCCCGTAATAGTAGTTGAC
GAAGTCGAAACCAGCATTACGAGGGTCAAGGAGGCGAAACTGCTGCTAGAAAAGCTGGGCGTCTGGAGCGACATTGAGAG
GGCGAAGGAGAGGACAAGGATACGTGCTGGTAAGGGTAAGAGGCGTGGCAGGAGATACATAACGCCCAAGAGCATCCTCT
TCATAGTATCGAACCACAACTCTTCCTTCGCGAGGGCCGTAGCAGGGCTACCCGGCGTAGATGTAGCTGAGCCATGGAAT
GTTAATGTGCTACAGCTAGCACCCGGTGGAGTGCCTGGCAGGCTCACAGTGATAACCCGCAGTGCCCTCGAAGAGCTAGG
CAAGAGGTTTGACTCGATACTCCTTCAGATCTAA

Upstream 100 bases:

>100_bases
AGGCACCACCAAAGATAACATACATAAGCCTTGCAAGCAAGCAGGGCAACTAGCCTAGGGCGCACCAATCGGTGAACGTG
TGGGCCAGGAGGTGTAGGCG

Downstream 100 bases:

>100_bases
CACTCTTAGCCGGTAGAGGGGTGACGAAGTATGACACGTACGCCCTGGGACATAATCATAAGGCCCGTGCAGAGCGAAAA
AGCGCTCAAGCTAATAGAGG

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MASKIGSMIFLLATQPPRVPVYNLEGSVAEEVQLPRVFGLPVRIDLIRRAFLSEFTARLQPKGRDPLAGKRTTARSFGVG
LGIARVPRIPGLGRAAFINSAVGGHLAHPPRVEKKIHEEINKKEKKLATASALAATARKEFVEKRGHRFPAQTVPVIVVD
EVETSITRVKEAKLLLEKLGVWSDIERAKERTRIRAGKGKRRGRRYITPKSILFIVSNHNSSFARAVAGLPGVDVAEPWN
VNVLQLAPGGVPGRLTVITRSALEELGKRFDSILLQI

Sequences:

>Translated_277_residues
MASKIGSMIFLLATQPPRVPVYNLEGSVAEEVQLPRVFGLPVRIDLIRRAFLSEFTARLQPKGRDPLAGKRTTARSFGVG
LGIARVPRIPGLGRAAFINSAVGGHLAHPPRVEKKIHEEINKKEKKLATASALAATARKEFVEKRGHRFPAQTVPVIVVD
EVETSITRVKEAKLLLEKLGVWSDIERAKERTRIRAGKGKRRGRRYITPKSILFIVSNHNSSFARAVAGLPGVDVAEPWN
VNVLQLAPGGVPGRLTVITRSALEELGKRFDSILLQI
>Mature_276_residues
ASKIGSMIFLLATQPPRVPVYNLEGSVAEEVQLPRVFGLPVRIDLIRRAFLSEFTARLQPKGRDPLAGKRTTARSFGVGL
GIARVPRIPGLGRAAFINSAVGGHLAHPPRVEKKIHEEINKKEKKLATASALAATARKEFVEKRGHRFPAQTVPVIVVDE
VETSITRVKEAKLLLEKLGVWSDIERAKERTRIRAGKGKRRGRRYITPKSILFIVSNHNSSFARAVAGLPGVDVAEPWNV
NVLQLAPGGVPGRLTVITRSALEELGKRFDSILLQI

Specific function: Forms part of the polypeptide exit tunnel [H]

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family [H]

Homologues:

Organism=Homo sapiens, GI16579885, Length=268, Percent_Identity=35.4477611940299, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17508669, Length=259, Percent_Identity=36.2934362934363, Blast_Score=145, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6320215, Length=263, Percent_Identity=35.7414448669202, Blast_Score=122, Evalue=6e-29,
Organism=Saccharomyces cerevisiae, GI6319505, Length=263, Percent_Identity=35.7414448669202, Blast_Score=122, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24650747, Length=269, Percent_Identity=31.2267657992565, Blast_Score=124, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970 [H]

Pfam domain/function: PF00573 Ribosomal_L4 [H]

EC number: NA

Molecular weight: Translated: 30414; Mature: 30283

Theoretical pI: Translated: 11.63; Mature: 11.63

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKIGSMIFLLATQPPRVPVYNLEGSVAEEVQLPRVFGLPVRIDLIRRAFLSEFTARLQ
CCCCCCCEEEEEECCCCCCEEEECCCCHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHCC
PKGRDPLAGKRTTARSFGVGLGIARVPRIPGLGRAAFINSAVGGHLAHPPRVEKKIHEEI
CCCCCCCCCCCCHHHHHCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
NKKEKKLATASALAATARKEFVEKRGHRFPAQTVPVIVVDEVETSITRVKEAKLLLEKLG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHC
VWSDIERAKERTRIRAGKGKRRGRRYITPKSILFIVSNHNSSFARAVAGLPGVDVAEPWN
CHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCC
VNVLQLAPGGVPGRLTVITRSALEELGKRFDSILLQI
CEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASKIGSMIFLLATQPPRVPVYNLEGSVAEEVQLPRVFGLPVRIDLIRRAFLSEFTARLQ
CCCCCCEEEEEECCCCCCEEEECCCCHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHCC
PKGRDPLAGKRTTARSFGVGLGIARVPRIPGLGRAAFINSAVGGHLAHPPRVEKKIHEEI
CCCCCCCCCCCCHHHHHCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
NKKEKKLATASALAATARKEFVEKRGHRFPAQTVPVIVVDEVETSITRVKEAKLLLEKLG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHC
VWSDIERAKERTRIRAGKGKRRGRRYITPKSILFIVSNHNSSFARAVAGLPGVDVAEPWN
CHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCC
VNVLQLAPGGVPGRLTVITRSALEELGKRFDSILLQI
CEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]