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The map label for this gene is rpl23p [H]

Identifier: 124028159

GI number: 124028159

Start: 1310266

End: 1310532

Strand: Direct

Name: rpl23p [H]

Synonym: Hbut_1304

Alternate gene names: 124028159

Gene position: 1310266-1310532 (Clockwise)

Preceding gene: 124028158

Following gene: 124028160

Centisome position: 78.59

GC content: 49.81

Gene sequence:

>267_bases
ATGACACGTACGCCCTGGGACATAATCATAAGGCCCGTGCAGAGCGAAAAAGCGCTCAAGCTAATAGAGGAGCAGAACAC
GCTAACGTTCATAGTTGACAGAAAGGCAACCAAGCACGACATTAAGAGAGCAGTTGAGGAGGCGTTTGGCGTAAAGGTTG
TCAAGGTTAACACTCTGATAACGCCGCGCGGCGAAAAGAAGGCCTATGTAAAGCTTGCAAAAGAGTACAGCGCGGCAGAT
GTAGCAGCAAGGCTTGGCCTACTCTAA

Upstream 100 bases:

>100_bases
CACAGTGATAACCCGCAGTGCCCTCGAAGAGCTAGGCAAGAGGTTTGACTCGATACTCCTTCAGATCTAACACTCTTAGC
CGGTAGAGGGGTGACGAAGT

Downstream 100 bases:

>100_bases
GCATCCTAGCCTTGTTTCATCAAACTTATTTTGGCTAGTGGGACACTATATCACTCATTCTGGAGCCCGCGCGAGTGCCC
CGTGTACCGGGGCCCGGTGA

Product: 50S ribosomal protein L23P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MTRTPWDIIIRPVQSEKALKLIEEQNTLTFIVDRKATKHDIKRAVEEAFGVKVVKVNTLITPRGEKKAYVKLAKEYSAAD
VAARLGLL

Sequences:

>Translated_88_residues
MTRTPWDIIIRPVQSEKALKLIEEQNTLTFIVDRKATKHDIKRAVEEAFGVKVVKVNTLITPRGEKKAYVKLAKEYSAAD
VAARLGLL
>Mature_87_residues
TRTPWDIIIRPVQSEKALKLIEEQNTLTFIVDRKATKHDIKRAVEEAFGVKVVKVNTLITPRGEKKAYVKLAKEYSAADV
AARLGLL

Specific function: Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome [H]

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family [H]

Homologues:

Organism=Homo sapiens, GI17105394, Length=83, Percent_Identity=55.421686746988, Blast_Score=94, Evalue=3e-20,
Organism=Homo sapiens, GI310129763, Length=81, Percent_Identity=53.0864197530864, Blast_Score=82, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17508675, Length=83, Percent_Identity=55.421686746988, Blast_Score=95, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17569427, Length=83, Percent_Identity=50.6024096385542, Blast_Score=86, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6324445, Length=83, Percent_Identity=48.1927710843374, Blast_Score=84, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24655502, Length=83, Percent_Identity=44.578313253012, Blast_Score=82, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR019985
- InterPro:   IPR012678
- InterPro:   IPR001014
- InterPro:   IPR013025 [H]

Pfam domain/function: PF00276 Ribosomal_L23 [H]

EC number: NA

Molecular weight: Translated: 9934; Mature: 9803

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTPWDIIIRPVQSEKALKLIEEQNTLTFIVDRKATKHDIKRAVEEAFGVKVVKVNTLI
CCCCCHHHEEECCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCEEEEEEEEEE
TPRGEKKAYVKLAKEYSAADVAARLGLL
CCCCCCHHHHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure 
TRTPWDIIIRPVQSEKALKLIEEQNTLTFIVDRKATKHDIKRAVEEAFGVKVVKVNTLI
CCCCHHHEEECCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCEEEEEEEEEE
TPRGEKKAYVKLAKEYSAADVAARLGLL
CCCCCCHHHHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]