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The map label for this gene is 124027999

Identifier: 124027999

GI number: 124027999

Start: 1149100

End: 1149663

Strand: Reverse

Name: 124027999

Synonym: Hbut_1137

Alternate gene names: NA

Gene position: 1149663-1149100 (Counterclockwise)

Preceding gene: 124028000

Following gene: 124027998

Centisome position: 68.96

GC content: 47.52

Gene sequence:

>564_bases
ATGTCGTATAGCCACCCTGCTAGCAGGTACGAAAGGGTCTACGTGTTGAGGATAGGTCACAGACCCGAACGAGATAAGAG
GATTACTACACATGTAGGGCTTGTAGCTAGAGCTTTTGGCGCTAATGGATTCATTTTAGGTGATACATGTGACGAGAAGG
TAATGGAATCGCTGAAAGATGTAATCGACCGCTGGGGCGGCAGCATGGAGTTAGCTTGTGGTGTCAACAGTAGACGCTAT
GTGCTAGAATGGAAGCGGGCTGGAGGCGAAGTCATACACCTAACCATGTATGGACTCCACGTAGACGACGTTATAGAGGA
GATTAAACGTAGCAGTAAACCTAAACTCATAATCGTCGGAGCCGAAAAGGTGCCTCCATTCTTCTACGAGTATGCCGACT
ACAATGTTGCGATTGGACATCAGCCTCACAGCGAAGTTGCAGCTCTAGCAATATTTCTCCACAAGCTTTATGAGGGTAAG
GAACTCTACATAGACTTTCCTAGAGCAAAACTACGCATAGTTCCGTCTGCCAGGGGCAAAAAGGTAGTAAGCCGAGAAGC
CTGA

Upstream 100 bases:

>100_bases
TCACAAGGCTACTAGAGGGTGCGGCATCAACCCTATACCCCGCCCTGGAAGCTGTGATACCGGTATCCGCAAAGACGGGT
GCTGGGGTGGCTAAGCTGCT

Downstream 100 bases:

>100_bases
TATTTAACCATAAGGGGGGCCTAGGAATGAGTAGCGAGATTGAGAAGCTCTTCACATTTGTCGAAAAGCTTGTAGACAGT
GATGCAAGAAAGGTTTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSYSHPASRYERVYVLRIGHRPERDKRITTHVGLVARAFGANGFILGDTCDEKVMESLKDVIDRWGGSMELACGVNSRRY
VLEWKRAGGEVIHLTMYGLHVDDVIEEIKRSSKPKLIIVGAEKVPPFFYEYADYNVAIGHQPHSEVAALAIFLHKLYEGK
ELYIDFPRAKLRIVPSARGKKVVSREA

Sequences:

>Translated_187_residues
MSYSHPASRYERVYVLRIGHRPERDKRITTHVGLVARAFGANGFILGDTCDEKVMESLKDVIDRWGGSMELACGVNSRRY
VLEWKRAGGEVIHLTMYGLHVDDVIEEIKRSSKPKLIIVGAEKVPPFFYEYADYNVAIGHQPHSEVAALAIFLHKLYEGK
ELYIDFPRAKLRIVPSARGKKVVSREA
>Mature_186_residues
SYSHPASRYERVYVLRIGHRPERDKRITTHVGLVARAFGANGFILGDTCDEKVMESLKDVIDRWGGSMELACGVNSRRYV
LEWKRAGGEVIHLTMYGLHVDDVIEEIKRSSKPKLIIVGAEKVPPFFYEYADYNVAIGHQPHSEVAALAIFLHKLYEGKE
LYIDFPRAKLRIVPSARGKKVVSREA

Specific function: Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs

COG id: COG1303

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aTrm56 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRM56_HYPBU (A2BLW3)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013319.1
- ProteinModelPortal:   A2BLW3
- SMR:   A2BLW3
- STRING:   A2BLW3
- GeneID:   4782986
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1137
- eggNOG:   arNOG09032
- HOGENOM:   HBG297370
- OMA:   GHRPERD
- BioCyc:   HBUT415426:HBUT_1137-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00077
- InterPro:   IPR002845
- PIRSF:   PIRSF016123
- ProDom:   PD016584

Pfam domain/function: PF01994 DUF127

EC number: NA

Molecular weight: Translated: 21243; Mature: 21112

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: BINDING 94-94

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSHPASRYERVYVLRIGHRPERDKRITTHVGLVARAFGANGFILGDTCDEKVMESLKD
CCCCCCCHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHH
VIDRWGGSMELACGVNSRRYVLEWKRAGGEVIHLTMYGLHVDDVIEEIKRSSKPKLIIVG
HHHHCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEE
AEKVPPFFYEYADYNVAIGHQPHSEVAALAIFLHKLYEGKELYIDFPRAKLRIVPSARGK
CCCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCC
KVVSREA
CCCCCCC
>Mature Secondary Structure 
SYSHPASRYERVYVLRIGHRPERDKRITTHVGLVARAFGANGFILGDTCDEKVMESLKD
CCCCCCHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHH
VIDRWGGSMELACGVNSRRYVLEWKRAGGEVIHLTMYGLHVDDVIEEIKRSSKPKLIIVG
HHHHCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEE
AEKVPPFFYEYADYNVAIGHQPHSEVAALAIFLHKLYEGKELYIDFPRAKLRIVPSARGK
CCCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCC
KVVSREA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA