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The map label for this gene is tfe

Identifier: 124027998

GI number: 124027998

Start: 1148552

End: 1149073

Strand: Reverse

Name: tfe

Synonym: Hbut_1136

Alternate gene names: 124027998

Gene position: 1149073-1148552 (Counterclockwise)

Preceding gene: 124027999

Following gene: 124027997

Centisome position: 68.92

GC content: 45.4

Gene sequence:

>522_bases
ATGAGTAGCGAGATTGAGAAGCTCTTCACATTTGTCGAAAAGCTTGTAGACAGTGATGCAAGAAAGGTTTTTGAAGCCCT
TTACGAGGCTGGGGAAGAACTATCAGAGGCTGATATAGCTACTAAGACAGGGTTAAAGCTAAATGTTGTAAGGAGAGCAC
TTAATAGCATGGCTGAAAAGGGCCTTGTGGTCTATCGTAGGCAGAAACATCCGCAGAAAAACAAGCTCGTATTCTACTGG
AGAATAAACTATGAGGGATTGCCATCGATAATAGAGTCTAGGAAGCGCGCAGCTCATGAGAAGCTCCGAACCCTACTAGA
GAAAGAGGAGTCCGTTCATTACTATGTGTGCCCACGTGATGGGACAAGGTATACGTTTGAAGAGGCGCTCGACCACGAGT
TCATATGTCCGCGTTGCGGCTCAATGCTTGTTCTTGATGAGGAGCGTGAACTAAGAATACAGATTCTCAAGCAGTACATA
AAGATGTTGGAGGATGAGCTTGGTGGAGCTAAGGCTAGTTGA

Upstream 100 bases:

>100_bases
TAGACTTTCCTAGAGCAAAACTACGCATAGTTCCGTCTGCCAGGGGCAAAAAGGTAGTAAGCCGAGAAGCCTGATATTTA
ACCATAAGGGGGGCCTAGGA

Downstream 100 bases:

>100_bases
CCTATTTTCTGGTGCTGGAGGCTTTGCAGAGGGGTTTAGGAGGGCTGGCTTCCGTATACTACTTGGTGTAGACAACAATC
CGGCCGCCATAAGGAGCTTC

Product: transcription initiation factor IIE, alpha subunit

Products: NA

Alternate protein names: TFE; TFIIE subunit alpha homolog; Transcription initiation factor TFIIE

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MSSEIEKLFTFVEKLVDSDARKVFEALYEAGEELSEADIATKTGLKLNVVRRALNSMAEKGLVVYRRQKHPQKNKLVFYW
RINYEGLPSIIESRKRAAHEKLRTLLEKEESVHYYVCPRDGTRYTFEEALDHEFICPRCGSMLVLDEERELRIQILKQYI
KMLEDELGGAKAS

Sequences:

>Translated_173_residues
MSSEIEKLFTFVEKLVDSDARKVFEALYEAGEELSEADIATKTGLKLNVVRRALNSMAEKGLVVYRRQKHPQKNKLVFYW
RINYEGLPSIIESRKRAAHEKLRTLLEKEESVHYYVCPRDGTRYTFEEALDHEFICPRCGSMLVLDEERELRIQILKQYI
KMLEDELGGAKAS
>Mature_172_residues
SSEIEKLFTFVEKLVDSDARKVFEALYEAGEELSEADIATKTGLKLNVVRRALNSMAEKGLVVYRRQKHPQKNKLVFYWR
INYEGLPSIIESRKRAAHEKLRTLLEKEESVHYYVCPRDGTRYTFEEALDHEFICPRCGSMLVLDEERELRIQILKQYIK
MLEDELGGAKAS

Specific function: Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (tbp), and transcription factor B (tfb) and RNA po

COG id: COG1675

COG function: function code K; Transcription initiation factor IIE, alpha subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH TFE/IIEalpha-type domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TFE_HYPBU (A2BLW2)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013318.1
- ProteinModelPortal:   A2BLW2
- SMR:   A2BLW2
- STRING:   A2BLW2
- GeneID:   4782071
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1136
- eggNOG:   arNOG08263
- HOGENOM:   HBG508653
- OMA:   LFILYEN
- BioCyc:   HBUT415426:HBUT_1136-MONOMER
- HAMAP:   MF_01909
- InterPro:   IPR016481
- InterPro:   IPR017919
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20176; Mature: 20045

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS51344 HTH_TFE_IIE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEIEKLFTFVEKLVDSDARKVFEALYEAGEELSEADIATKTGLKLNVVRRALNSMAEK
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
GLVVYRRQKHPQKNKLVFYWRINYEGLPSIIESRKRAAHEKLRTLLEKEESVHYYVCPRD
CCEEHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
GTRYTFEEALDHEFICPRCGSMLVLDEERELRIQILKQYIKMLEDELGGAKAS
CCCCHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SSEIEKLFTFVEKLVDSDARKVFEALYEAGEELSEADIATKTGLKLNVVRRALNSMAEK
CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
GLVVYRRQKHPQKNKLVFYWRINYEGLPSIIESRKRAAHEKLRTLLEKEESVHYYVCPRD
CCEEHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
GTRYTFEEALDHEFICPRCGSMLVLDEERELRIQILKQYIKMLEDELGGAKAS
CCCCHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA