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The map label for this gene is dppB [H]

Identifier: 123966372

GI number: 123966372

Start: 992047

End: 993111

Strand: Reverse

Name: dppB [H]

Synonym: P9515_11391

Alternate gene names: 123966372

Gene position: 993111-992047 (Counterclockwise)

Preceding gene: 123966373

Following gene: 123966370

Centisome position: 58.28

GC content: 31.46

Gene sequence:

>1065_bases
ATGGGGCAGGAATTATTTCAATTAGCGATCTTAAATTTATTAATGAGTAGAGATTTCAATAAAATTTTAAATTATTCTTT
ATTAAAGATTTCTTTGATCCCTTTAATGTTATGGCTTATATCTACATTAGTTTTTATTTTGTTGAGAGTTGCTCCCGGTG
ACCCAGTTGATGCAATTCTTGGATCAGGAGCAAATGAAGCTTCAAGAGAACTTCTTCGATCCAAATTAGGGTTAAATGAA
TCTCTTTTAAATCAATATCTAACTTTCATTAATAATATTTTGCACTTAAACTTTGGAGAATCCTTAAGTACTCAAGAGCC
GGTTTTTAATATTATCCTTAAGTCATTACCAGCAAGTCTTGAATTAGGTATCTTTTCAATATTTTTTGCAATCCTAATAG
GATTTCCTTTGGGATTTTTGAGTATTAAATATAAAGGTAAAAAAGGAGATTACATAGCTAGATTGATTGGAATTGCTTCA
TATGCAATACCTCCTTTCTGGGGGGCAATGATAGTTCAATTAATATTATCTGTATATTTAAGAATTTTTCCAATTGGCGG
GAGGTTTCCTATAATTCATAGCCAACCTAACATTACAGGCTTTTTAATTCTAGATAGTCTAATTGATAATAATATTGTCT
ATTTAAGAGATAGCATATATCATCTTGCACTCCCCTCGTTAACACTTGGGTTTCTTTTGAGTGGTATTTTTAGTAGATCT
TTAAGGATAAATCTAGACAAGACTATAAAAAGCGATTATGTAAAAGCCGCTTTAACCAGAGGAATTACAAGAAGAAAAAT
TGTATTTAATCATGCTTTGCCTAATTCACTTTTGCCTATTGTTACTATTGCTGGCTTAACCATAGCTTCTTTAGCAGGAG
GAGCGCTTCTCTTTGAAGTCACTTTTTCATGGCCAGGGATAGCTTTAAGATTATATGAAGCCATCACCCAAAGGGATTAT
ACTGTCGTTCAAGGAATCGTAATTGTTACCTCTTTCCTAATAGTTTCTTTAAATCTTTTGGTAGATATTTTTATTGCATT
ATTAGATCCTCGTATTGAATACTAA

Upstream 100 bases:

>100_bases
GAAATAGAGAAAATAGCTTCAGAATCAATACCTTATATTCCTATATGGATTTCATCTCAAAAAGCTTGGTCTCAAAATAA
AGTATCAAAACCTATTTTTA

Downstream 100 bases:

>100_bases
TTTTTGATGATTTCTTTTATGGTCTTTCTATCTAAAATATGAAAATCAAGATTACTTTCAGAAAGGTTTTTCATGACTTT
AATACTTTCATTCTTTTTAA

Product: putative ABC transporter, oligopeptides

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MGQELFQLAILNLLMSRDFNKILNYSLLKISLIPLMLWLISTLVFILLRVAPGDPVDAILGSGANEASRELLRSKLGLNE
SLLNQYLTFINNILHLNFGESLSTQEPVFNIILKSLPASLELGIFSIFFAILIGFPLGFLSIKYKGKKGDYIARLIGIAS
YAIPPFWGAMIVQLILSVYLRIFPIGGRFPIIHSQPNITGFLILDSLIDNNIVYLRDSIYHLALPSLTLGFLLSGIFSRS
LRINLDKTIKSDYVKAALTRGITRRKIVFNHALPNSLLPIVTIAGLTIASLAGGALLFEVTFSWPGIALRLYEAITQRDY
TVVQGIVIVTSFLIVSLNLLVDIFIALLDPRIEY

Sequences:

>Translated_354_residues
MGQELFQLAILNLLMSRDFNKILNYSLLKISLIPLMLWLISTLVFILLRVAPGDPVDAILGSGANEASRELLRSKLGLNE
SLLNQYLTFINNILHLNFGESLSTQEPVFNIILKSLPASLELGIFSIFFAILIGFPLGFLSIKYKGKKGDYIARLIGIAS
YAIPPFWGAMIVQLILSVYLRIFPIGGRFPIIHSQPNITGFLILDSLIDNNIVYLRDSIYHLALPSLTLGFLLSGIFSRS
LRINLDKTIKSDYVKAALTRGITRRKIVFNHALPNSLLPIVTIAGLTIASLAGGALLFEVTFSWPGIALRLYEAITQRDY
TVVQGIVIVTSFLIVSLNLLVDIFIALLDPRIEY
>Mature_353_residues
GQELFQLAILNLLMSRDFNKILNYSLLKISLIPLMLWLISTLVFILLRVAPGDPVDAILGSGANEASRELLRSKLGLNES
LLNQYLTFINNILHLNFGESLSTQEPVFNIILKSLPASLELGIFSIFFAILIGFPLGFLSIKYKGKKGDYIARLIGIASY
AIPPFWGAMIVQLILSVYLRIFPIGGRFPIIHSQPNITGFLILDSLIDNNIVYLRDSIYHLALPSLTLGFLLSGIFSRSL
RINLDKTIKSDYVKAALTRGITRRKIVFNHALPNSLLPIVTIAGLTIASLAGGALLFEVTFSWPGIALRLYEAITQRDYT
VVQGIVIVTSFLIVSLNLLVDIFIALLDPRIEY

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=323, Percent_Identity=33.7461300309598, Blast_Score=208, Evalue=3e-55,
Organism=Escherichia coli, GI1787761, Length=314, Percent_Identity=34.7133757961783, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787053, Length=334, Percent_Identity=29.6407185628743, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=30.4477611940298, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1787550, Length=275, Percent_Identity=32, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=23.9130434782609, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788504, Length=378, Percent_Identity=25.9259259259259, Blast_Score=111, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 39307; Mature: 39176

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQELFQLAILNLLMSRDFNKILNYSLLKISLIPLMLWLISTLVFILLRVAPGDPVDAIL
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GSGANEASRELLRSKLGLNESLLNQYLTFINNILHLNFGESLSTQEPVFNIILKSLPASL
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHH
ELGIFSIFFAILIGFPLGFLSIKYKGKKGDYIARLIGIASYAIPPFWGAMIVQLILSVYL
HHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RIFPIGGRFPIIHSQPNITGFLILDSLIDNNIVYLRDSIYHLALPSLTLGFLLSGIFSRS
HHHCCCCCCCEEECCCCCEEHHEEHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCC
LRINLDKTIKSDYVKAALTRGITRRKIVFNHALPNSLLPIVTIAGLTIASLAGGALLFEV
EEEEEHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
TFSWPGIALRLYEAITQRDYTVVQGIVIVTSFLIVSLNLLVDIFIALLDPRIEY
EECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GQELFQLAILNLLMSRDFNKILNYSLLKISLIPLMLWLISTLVFILLRVAPGDPVDAIL
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GSGANEASRELLRSKLGLNESLLNQYLTFINNILHLNFGESLSTQEPVFNIILKSLPASL
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHH
ELGIFSIFFAILIGFPLGFLSIKYKGKKGDYIARLIGIASYAIPPFWGAMIVQLILSVYL
HHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RIFPIGGRFPIIHSQPNITGFLILDSLIDNNIVYLRDSIYHLALPSLTLGFLLSGIFSRS
HHHCCCCCCCEEECCCCCEEHHEEHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCC
LRINLDKTIKSDYVKAALTRGITRRKIVFNHALPNSLLPIVTIAGLTIASLAGGALLFEV
EEEEEHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
TFSWPGIALRLYEAITQRDYTVVQGIVIVTSFLIVSLNLLVDIFIALLDPRIEY
EECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]