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The map label for this gene is ddpA [H]

Identifier: 123966373

GI number: 123966373

Start: 993062

End: 994633

Strand: Reverse

Name: ddpA [H]

Synonym: P9515_11401

Alternate gene names: 123966373

Gene position: 994633-993062 (Counterclockwise)

Preceding gene: 123966374

Following gene: 123966372

Centisome position: 58.36

GC content: 29.33

Gene sequence:

>1572_bases
ATGCAAAATAATTTTTTAGTAACCACTTTCCTTTTCTTTATTTCCTTATCACAGTTTTCTTGCGTTCCAGATAGTAGACC
CAAAAGAATTACAATTGCGAGTTCAGGAAAAATAGAGTCTTTAGATCCTGCAAGGGCTAGTACTCTTAAGTCAATTCAAC
TATTAAGTTCTCTTGGAGATACTTTATATGAATTAAATTCTAAGGGAGAATTAATCCCTGAATTAGCATCAGGAATGCCA
ATTTTTTCAAAAGATAAATTAAAAATAACAATTAATCTTAGAAGAAATGTTCTTTTTCATGATGGAACTTTATTTAATTC
AAATGCTCTAAAATTTTCTTTTGACAGATTTAAAAGAATTGGAACAATGAATTATATTTTGGGGAATAAAATACAATCAA
TAGAAACACCAAGCGAATACAAGGTTGTCATTAATTTAACCAAACCATCTAGTTCTATTAATGGATTACTTACAGCTGTA
TATTTAACACCTATTTCCCCGACTTTTTATAAGGATTATTCTGATAAATTTTTAAATGATCAATTTGTTGGAACTGGTAA
ATATATACTTAAGAGATTTTCAAATGAAGTTCAAATAATTGATCCAAATTTAAATCATTGGGGTAATAAACCTAATAATG
AGGGTGTGAATTTTATAGGATATTCCAATTCTTCTTCTCTTTTCGGAGCTTTAAAAAGTAAACAAATTGATGTTCTATTA
TCAAATTCAATTGATGATAGTCAAAGAAATAATTTAAATTCTTTAAGCAAAAAGAATGAAATTAAAGAAGGAAATAGTCC
TGCTACAGAAATAAGCTTCATTAGTCTTAGAACAAATTCTTATCCGTTAAATAACCTTAATGTAAGGTTAGCGATTGCTA
AAAGTCTAAATAGAAAATTAATTAGCGATAAAGTTAGTTATGGTTTGAGGGAACCATTAAGATCGATTGTTCCTCCCATT
TTAAAAAAAAATAAGCAGGAATTATGGCCAGAATATAATCCTGTAGAAGCGAAAAATTTATTACAAAAAGAAGGTTTCTG
TAATGGAAACATTTTAGAATTACCTCTTACTTTCCGATCTAATGTGCCTGCTGATAGACTTATTGCTCTTTCTTGGCAAG
AGGAAATCAAAAATATATTGAATGAATGTATTAGTATCCAACTAAACGGGGTAGAGTCAACAACAATTTATAAAAATCTT
AATCTAGGTCTTTACACAGCGGTCATTCTTGATTGGACAGGAGCTTATTCTGATCCTGAGGCATACCTTACACCTCTTCT
AAGTTGTAGTGAGTTAGATGGTGAAAAATGTAAAAAAGGAGAATCAGTTTATAGCGGAAGTTTTTGGGGATCGAGGATTG
TAGATGATTTATTTCTTGAGAGTGAAAAATTAAATGGAGATGAAAGATTAGCCAAGTTAATTGAAATAGAGAAAATAGCT
TCAGAATCAATACCTTATATTCCTATATGGATTTCATCTCAAAAAGCTTGGTCTCAAAATAAAGTATCAAAACCTATTTT
TAATGGGGCAGGAATTATTTCAATTAGCGATCTTAAATTTATTAATGAGTAG

Upstream 100 bases:

>100_bases
AAGTTAAAAGACCCTTTTCTTTGGAAATTAATCAAATTACAATATTGACCTTTTGTACTAGAAGTTTTATTGAATAATAA
TTATTGAAATTTTAAATAAA

Downstream 100 bases:

>100_bases
AGATTTCAATAAAATTTTAAATTATTCTTTATTAAAGATTTCTTTGATCCCTTTAATGTTATGGCTTATATCTACATTAG
TTTTTATTTTGTTGAGAGTT

Product: ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MQNNFLVTTFLFFISLSQFSCVPDSRPKRITIASSGKIESLDPARASTLKSIQLLSSLGDTLYELNSKGELIPELASGMP
IFSKDKLKITINLRRNVLFHDGTLFNSNALKFSFDRFKRIGTMNYILGNKIQSIETPSEYKVVINLTKPSSSINGLLTAV
YLTPISPTFYKDYSDKFLNDQFVGTGKYILKRFSNEVQIIDPNLNHWGNKPNNEGVNFIGYSNSSSLFGALKSKQIDVLL
SNSIDDSQRNNLNSLSKKNEIKEGNSPATEISFISLRTNSYPLNNLNVRLAIAKSLNRKLISDKVSYGLREPLRSIVPPI
LKKNKQELWPEYNPVEAKNLLQKEGFCNGNILELPLTFRSNVPADRLIALSWQEEIKNILNECISIQLNGVESTTIYKNL
NLGLYTAVILDWTGAYSDPEAYLTPLLSCSELDGEKCKKGESVYSGSFWGSRIVDDLFLESEKLNGDERLAKLIEIEKIA
SESIPYIPIWISSQKAWSQNKVSKPIFNGAGIISISDLKFINE

Sequences:

>Translated_523_residues
MQNNFLVTTFLFFISLSQFSCVPDSRPKRITIASSGKIESLDPARASTLKSIQLLSSLGDTLYELNSKGELIPELASGMP
IFSKDKLKITINLRRNVLFHDGTLFNSNALKFSFDRFKRIGTMNYILGNKIQSIETPSEYKVVINLTKPSSSINGLLTAV
YLTPISPTFYKDYSDKFLNDQFVGTGKYILKRFSNEVQIIDPNLNHWGNKPNNEGVNFIGYSNSSSLFGALKSKQIDVLL
SNSIDDSQRNNLNSLSKKNEIKEGNSPATEISFISLRTNSYPLNNLNVRLAIAKSLNRKLISDKVSYGLREPLRSIVPPI
LKKNKQELWPEYNPVEAKNLLQKEGFCNGNILELPLTFRSNVPADRLIALSWQEEIKNILNECISIQLNGVESTTIYKNL
NLGLYTAVILDWTGAYSDPEAYLTPLLSCSELDGEKCKKGESVYSGSFWGSRIVDDLFLESEKLNGDERLAKLIEIEKIA
SESIPYIPIWISSQKAWSQNKVSKPIFNGAGIISISDLKFINE
>Mature_523_residues
MQNNFLVTTFLFFISLSQFSCVPDSRPKRITIASSGKIESLDPARASTLKSIQLLSSLGDTLYELNSKGELIPELASGMP
IFSKDKLKITINLRRNVLFHDGTLFNSNALKFSFDRFKRIGTMNYILGNKIQSIETPSEYKVVINLTKPSSSINGLLTAV
YLTPISPTFYKDYSDKFLNDQFVGTGKYILKRFSNEVQIIDPNLNHWGNKPNNEGVNFIGYSNSSSLFGALKSKQIDVLL
SNSIDDSQRNNLNSLSKKNEIKEGNSPATEISFISLRTNSYPLNNLNVRLAIAKSLNRKLISDKVSYGLREPLRSIVPPI
LKKNKQELWPEYNPVEAKNLLQKEGFCNGNILELPLTFRSNVPADRLIALSWQEEIKNILNECISIQLNGVESTTIYKNL
NLGLYTAVILDWTGAYSDPEAYLTPLLSCSELDGEKCKKGESVYSGSFWGSRIVDDLFLESEKLNGDERLAKLIEIEKIA
SESIPYIPIWISSQKAWSQNKVSKPIFNGAGIISISDLKFINE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=434, Percent_Identity=23.7327188940092, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081878, Length=516, Percent_Identity=23.4496124031008, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1789887, Length=452, Percent_Identity=24.7787610619469, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787052, Length=470, Percent_Identity=22.1276595744681, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1789966, Length=451, Percent_Identity=22.1729490022173, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787551, Length=497, Percent_Identity=21.5291750503018, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58666; Mature: 58666

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNNFLVTTFLFFISLSQFSCVPDSRPKRITIASSGKIESLDPARASTLKSIQLLSSLGD
CCCCEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
TLYELNSKGELIPELASGMPIFSKDKLKITINLRRNVLFHDGTLFNSNALKFSFDRFKRI
HHHHHCCCCCCHHHHHCCCCEECCCCEEEEEEEECEEEEECCEEECCCCEEEEHHHHHHH
GTMNYILGNKIQSIETPSEYKVVINLTKPSSSINGLLTAVYLTPISPTFYKDYSDKFLND
CCHHHHHCCCHHCCCCCCCEEEEEEEECCCCHHHHEEEEEEEECCCCHHHHCHHHHHCCC
QFVGTGKYILKRFSNEVQIIDPNLNHWGNKPNNEGVNFIGYSNSSSLFGALKSKQIDVLL
CCCCCHHHHHHHHCCCEEEECCCCHHCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEE
SNSIDDSQRNNLNSLSKKNEIKEGNSPATEISFISLRTNSYPLNNLNVRLAIAKSLNRKL
ECCCCCHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEHHHHHHHH
ISDKVSYGLREPLRSIVPPILKKNKQELWPEYNPVEAKNLLQKEGFCNGNILELPLTFRS
HHHHHHHHHHHHHHHHCCHHHHCCHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEEHCCC
NVPADRLIALSWQEEIKNILNECISIQLNGVESTTIYKNLNLGLYTAVILDWTGAYSDPE
CCCHHHEEEEEHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCH
AYLTPLLSCSELDGEKCKKGESVYSGSFWGSRIVDDLFLESEKLNGDERLAKLIEIEKIA
HHHHHHHHHHCCCCHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SESIPYIPIWISSQKAWSQNKVSKPIFNGAGIISISDLKFINE
HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECEEECCC
>Mature Secondary Structure
MQNNFLVTTFLFFISLSQFSCVPDSRPKRITIASSGKIESLDPARASTLKSIQLLSSLGD
CCCCEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
TLYELNSKGELIPELASGMPIFSKDKLKITINLRRNVLFHDGTLFNSNALKFSFDRFKRI
HHHHHCCCCCCHHHHHCCCCEECCCCEEEEEEEECEEEEECCEEECCCCEEEEHHHHHHH
GTMNYILGNKIQSIETPSEYKVVINLTKPSSSINGLLTAVYLTPISPTFYKDYSDKFLND
CCHHHHHCCCHHCCCCCCCEEEEEEEECCCCHHHHEEEEEEEECCCCHHHHCHHHHHCCC
QFVGTGKYILKRFSNEVQIIDPNLNHWGNKPNNEGVNFIGYSNSSSLFGALKSKQIDVLL
CCCCCHHHHHHHHCCCEEEECCCCHHCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEE
SNSIDDSQRNNLNSLSKKNEIKEGNSPATEISFISLRTNSYPLNNLNVRLAIAKSLNRKL
ECCCCCHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEHHHHHHHH
ISDKVSYGLREPLRSIVPPILKKNKQELWPEYNPVEAKNLLQKEGFCNGNILELPLTFRS
HHHHHHHHHHHHHHHHCCHHHHCCHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEEHCCC
NVPADRLIALSWQEEIKNILNECISIQLNGVESTTIYKNLNLGLYTAVILDWTGAYSDPE
CCCHHHEEEEEHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCH
AYLTPLLSCSELDGEKCKKGESVYSGSFWGSRIVDDLFLESEKLNGDERLAKLIEIEKIA
HHHHHHHHHHCCCCHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SESIPYIPIWISSQKAWSQNKVSKPIFNGAGIISISDLKFINE
HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]