| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is ymeB [H]
Identifier: 123966008
GI number: 123966008
Start: 700734
End: 701540
Strand: Direct
Name: ymeB [H]
Synonym: P9515_07731
Alternate gene names: 123966008
Gene position: 700734-701540 (Clockwise)
Preceding gene: 123966007
Following gene: 123966010
Centisome position: 41.12
GC content: 24.54
Gene sequence:
>807_bases GTGACTAGTGATTATTGGCTTGAAGCAAAAAATATTAATTGTTTTAAGAATGGATATGAAGTTGTCAAGGATTTAAATTT AAAACTGAAATATAGTGATAACGTGGTTTTGATTGGACCAAATGGGTCAGGGAAATCATCTTTATTAGAATTAATAAATA GAGATATTTATCCAGTTATTAAAAAAAATGTGGTTTTTAAATTATTTAATGAAGAGCTTATCAATATATGGGAACTTAGA AAAAAAGTTAGTATAGTAAATTCTGATCTTAAGACAAGAATTAACCCTAAGCTAAAAGTTTTTGATTTAATTATTAGTGG TTTATACGGCAAATACTGCAAAATAACTGATAAATCAAAAAAAGATTATTTATTAGTAGAAAACCTGATAAATAAAATGT CCATAATAAATTTATCTCAAAAATATTTTTCTCATTTGTCCGAGGGAGAAAAACAAATTGTACTAATAGCTAGAGCATTA GTAAAAAAACCAGATATTTTAATTTTAGATGAGCCAATTGCTAATTTAGATTTGAAATCAAAATTTTATGTGATAGATCA AATTAATGAATTAAATAAATTAAAAACAACAATATTTTGCGTAACTCACGATATTTCAATGATTACTGAAATGTATAACA GGATCATAATGTTGAAGGACAGAACGATAATTGCAGATGGAACTCAAAGTGAAACTATGATTAATAAAAATATAAATAAT TTATTTGATATTAATATTGAACTTAGAAGACATAAAGAAACCTGGCATATTTACAGGAAATCTAAACAACGACTATCAAG AAAATAA
Upstream 100 bases:
>100_bases TGAAAAAAGTTAATAGACCAGCTTGGCTTAACTGGCTTTATCTTATGATATTTCTTTTAAGCTCAATACAGTTATTTATA TTTTGGAGTAGCAAATTTAA
Downstream 100 bases:
>100_bases TCAAGGCAATTACAAAATAAATAAAATTTTTATTTTTAAGTGGAGAAAAAGATTTATTTCTAAAAGAAGAGGAACCACAT TTAAAACAAACCATTCTGCC
Product: ABC transporter ATPase
Products: ADP; phosphate; L-arginine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MTSDYWLEAKNINCFKNGYEVVKDLNLKLKYSDNVVLIGPNGSGKSSLLELINRDIYPVIKKNVVFKLFNEELINIWELR KKVSIVNSDLKTRINPKLKVFDLIISGLYGKYCKITDKSKKDYLLVENLINKMSIINLSQKYFSHLSEGEKQIVLIARAL VKKPDILILDEPIANLDLKSKFYVIDQINELNKLKTTIFCVTHDISMITEMYNRIIMLKDRTIIADGTQSETMINKNINN LFDINIELRRHKETWHIYRKSKQRLSRK
Sequences:
>Translated_268_residues MTSDYWLEAKNINCFKNGYEVVKDLNLKLKYSDNVVLIGPNGSGKSSLLELINRDIYPVIKKNVVFKLFNEELINIWELR KKVSIVNSDLKTRINPKLKVFDLIISGLYGKYCKITDKSKKDYLLVENLINKMSIINLSQKYFSHLSEGEKQIVLIARAL VKKPDILILDEPIANLDLKSKFYVIDQINELNKLKTTIFCVTHDISMITEMYNRIIMLKDRTIIADGTQSETMINKNINN LFDINIELRRHKETWHIYRKSKQRLSRK >Mature_267_residues TSDYWLEAKNINCFKNGYEVVKDLNLKLKYSDNVVLIGPNGSGKSSLLELINRDIYPVIKKNVVFKLFNEELINIWELRK KVSIVNSDLKTRINPKLKVFDLIISGLYGKYCKITDKSKKDYLLVENLINKMSIINLSQKYFSHLSEGEKQIVLIARALV KKPDILILDEPIANLDLKSKFYVIDQINELNKLKTTIFCVTHDISMITEMYNRIIMLKDRTIIADGTQSETMINKNINNL FDINIELRRHKETWHIYRKSKQRLSRK
Specific function: Part Of The Binding-Protein-Dependent Transport System For Arginine. Probably Responsible For Energy Coupling To The Transport System. [C]
COG id: COG1119
COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI255708477, Length=260, Percent_Identity=28.0769230769231, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI148612844, Length=230, Percent_Identity=30, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI9961250, Length=226, Percent_Identity=28.7610619469027, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4505771, Length=226, Percent_Identity=28.7610619469027, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI9961252, Length=226, Percent_Identity=28.7610619469027, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI42741659, Length=225, Percent_Identity=29.3333333333333, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI215820660, Length=243, Percent_Identity=23.8683127572016, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI20143975, Length=243, Percent_Identity=23.8683127572016, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=30.0884955752212, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1789672, Length=224, Percent_Identity=28.125, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1786345, Length=254, Percent_Identity=25.5905511811024, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787370, Length=230, Percent_Identity=30, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787029, Length=224, Percent_Identity=26.7857142857143, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790739, Length=254, Percent_Identity=24.8031496062992, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=27.7056277056277, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788506, Length=216, Percent_Identity=26.3888888888889, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786803, Length=239, Percent_Identity=24.2677824267782, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=27.2727272727273, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1789873, Length=217, Percent_Identity=27.6497695852535, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786975, Length=167, Percent_Identity=31.7365269461078, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789032, Length=220, Percent_Identity=28.1818181818182, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788761, Length=218, Percent_Identity=27.9816513761468, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788450, Length=239, Percent_Identity=26.3598326359833, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788165, Length=263, Percent_Identity=25.0950570342205, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786872, Length=222, Percent_Identity=27.9279279279279, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1789864, Length=234, Percent_Identity=23.9316239316239, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786319, Length=193, Percent_Identity=25.9067357512953, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787164, Length=207, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787143, Length=238, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787547, Length=246, Percent_Identity=23.1707317073171, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87081834, Length=224, Percent_Identity=26.3392857142857, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI48994883, Length=221, Percent_Identity=26.2443438914027, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1787500, Length=240, Percent_Identity=21.6666666666667, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789593, Length=236, Percent_Identity=25, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI145693107, Length=227, Percent_Identity=22.9074889867841, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789963, Length=220, Percent_Identity=26.8181818181818, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1789991, Length=223, Percent_Identity=27.3542600896861, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787758, Length=203, Percent_Identity=22.1674876847291, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI87082268, Length=228, Percent_Identity=23.6842105263158, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=25.5924170616114, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787041, Length=230, Percent_Identity=25.6521739130435, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=228, Percent_Identity=30.7017543859649, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17533971, Length=225, Percent_Identity=30.2222222222222, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17569145, Length=233, Percent_Identity=27.4678111587983, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17541710, Length=228, Percent_Identity=28.5087719298246, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193211015, Length=223, Percent_Identity=26.457399103139, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193211017, Length=223, Percent_Identity=26.457399103139, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17567265, Length=227, Percent_Identity=29.5154185022026, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI212646699, Length=223, Percent_Identity=26.9058295964126, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17558664, Length=225, Percent_Identity=27.1111111111111, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25146777, Length=229, Percent_Identity=28.3842794759825, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71996809, Length=223, Percent_Identity=25.5605381165919, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI115535101, Length=220, Percent_Identity=28.1818181818182, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17569143, Length=227, Percent_Identity=27.3127753303965, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17551702, Length=217, Percent_Identity=27.6497695852535, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71992290, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17551700, Length=217, Percent_Identity=27.6497695852535, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17565938, Length=230, Percent_Identity=24.3478260869565, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=224, Percent_Identity=29.9107142857143, Blast_Score=77, Evalue=3e-15, Organism=Drosophila melanogaster, GI281363262, Length=237, Percent_Identity=31.6455696202532, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24653245, Length=237, Percent_Identity=31.6455696202532, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI85726357, Length=221, Percent_Identity=28.0542986425339, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI17136662, Length=224, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24659289, Length=220, Percent_Identity=29.5454545454545, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24581191, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24581189, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24581193, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24581195, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI85724864, Length=217, Percent_Identity=23.963133640553, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580555, Length=217, Percent_Identity=23.963133640553, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI85816269, Length=217, Percent_Identity=23.963133640553, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580553, Length=217, Percent_Identity=23.963133640553, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 31360; Mature: 31229
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSDYWLEAKNINCFKNGYEVVKDLNLKLKYSDNVVLIGPNGSGKSSLLELINRDIYPVI CCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEEECCCCCCHHHHHHHHCCCHHHHH KKNVVFKLFNEELINIWELRKKVSIVNSDLKTRINPKLKVFDLIISGLYGKYCKITDKSK HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCC KDYLLVENLINKMSIINLSQKYFSHLSEGEKQIVLIARALVKKPDILILDEPIANLDLKS CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCC KFYVIDQINELNKLKTTIFCVTHDISMITEMYNRIIMLKDRTIIADGTQSETMINKNINN EEEEEHHHHHHHHHEEEEEEEEHHHHHHHHHHHCEEEEECCEEEECCCCCHHHHHCCCCC LFDINIELRRHKETWHIYRKSKQRLSRK EEEEEEEEEECCHHHHHHHHHHHHHCCC >Mature Secondary Structure TSDYWLEAKNINCFKNGYEVVKDLNLKLKYSDNVVLIGPNGSGKSSLLELINRDIYPVI CCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEEECCCCCCHHHHHHHHCCCHHHHH KKNVVFKLFNEELINIWELRKKVSIVNSDLKTRINPKLKVFDLIISGLYGKYCKITDKSK HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCC KDYLLVENLINKMSIINLSQKYFSHLSEGEKQIVLIARALVKKPDILILDEPIANLDLKS CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCC KFYVIDQINELNKLKTTIFCVTHDISMITEMYNRIIMLKDRTIIADGTQSETMINKNINN EEEEEHHHHHHHHHEEEEEEEEHHHHHHHHHHHCEEEEECCEEEECCCCCHHHHHCCCCC LFDINIELRRHKETWHIYRKSKQRLSRK EEEEEEEEEECCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-arginine [Periplasm]; H2O [C]
Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1400210; 11337471 [H]