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The map label for this gene is rbcR [H]

Identifier: 123965410

GI number: 123965410

Start: 160293

End: 161246

Strand: Reverse

Name: rbcR [H]

Synonym: P9515_01751

Alternate gene names: 123965410

Gene position: 161246-160293 (Counterclockwise)

Preceding gene: 123965416

Following gene: 123965407

Centisome position: 9.46

GC content: 34.8

Gene sequence:

>954_bases
ATGCCCGAATTACCTTTTACACTTGACCAATTAAGAATATTAAAAGCTATTGCAGCTCAAGGAAGTTTTAAAAAGGCTGC
AGATTTACTTTACGTCACTCAACCAGCTGTCAGTTTACAAATTCAAAATTTAGAAAAACAACTTGAGATCACAATTTTTG
ATAGGGGTGGTAGGAAAGCACTTCTAACTGAAGGAGGTAAGCTATTACTTGAATATTGCGAAAGAATACTGAATCAATGC
GATGAGGCATGCAAAGCTATTGAGGACTTAAATAGCTTAAAAGGTGGAACACTCATAATTGGAGCTAGTCAAACTACAGG
GACCTACCTAATGCCGCGGATGATAGGACTTTTTCGTCAAAAATATCCTGATGTATCTGTTCAACTGCAGGTTCACAGTA
CTAGAAGAACAGGTTGGAGCGTTGCTAATGGTCAAATTGATCTTGCTATTATTGGAGGTCAGTTACCAAGCGATCTAGAA
AACTTATTACAAGTAATCCCATATGCAACTGATGAATTAGCTCTTGTATTGCCAACAAAACACCCACTTGCCAATAAGAG
AGAACTTATGAAAGAAGATTTATACAAATTGAATTTCGTCACTTTAGATTCTCAATCAACAACAAGGAAAGTTGTTGATA
AACTTTTGAAGGATTCAGGTCTTGATATTCAAAGATTAAAAATCGAAATGGAGTTAAATTCTCTTGAGGCAATTAAAAAC
GCAGTTCAATCTGGTCTTGGTGTTTCTTTTTTACCTGTTGTTTCTATTGAGAGAGAATTAGCAGGTGGATCAATACATAA
ATCTTACTTAGCCGATTTAGAGGTAAAAAGAGAGCTTAAATTAATTACAAATCCATCAAGATACACTTCTAGAGCCTCAG
AAGCGTTTAAAAAAAATATATTACCTCAATTTGCAAGCTCTGAAAGTCCATTAAGGCAAATTAATTCAATCTAA

Upstream 100 bases:

>100_bases
GTTTTATGAGTCTCCATATAATTTTTAAATACAAGTTATTTATTATTAACAATAATACCCTTAGGTATTAGAATTACTAT
CAAATAGTAGGCATCAATAA

Downstream 100 bases:

>100_bases
AATTGAATAGCTTCCTTATTTATTCCCACCCCTCCATCTTCAGCCTGTCCTTCTCCCTTAATAATAAATTTGTTCTCATT
AACATCAGTCTGATAAACAC

Product: putative Rubisco transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MPELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEGGKLLLEYCERILNQC
DEACKAIEDLNSLKGGTLIIGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPSDLE
NLLQVIPYATDELALVLPTKHPLANKRELMKEDLYKLNFVTLDSQSTTRKVVDKLLKDSGLDIQRLKIEMELNSLEAIKN
AVQSGLGVSFLPVVSIERELAGGSIHKSYLADLEVKRELKLITNPSRYTSRASEAFKKNILPQFASSESPLRQINSI

Sequences:

>Translated_317_residues
MPELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEGGKLLLEYCERILNQC
DEACKAIEDLNSLKGGTLIIGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPSDLE
NLLQVIPYATDELALVLPTKHPLANKRELMKEDLYKLNFVTLDSQSTTRKVVDKLLKDSGLDIQRLKIEMELNSLEAIKN
AVQSGLGVSFLPVVSIERELAGGSIHKSYLADLEVKRELKLITNPSRYTSRASEAFKKNILPQFASSESPLRQINSI
>Mature_316_residues
PELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEGGKLLLEYCERILNQCD
EACKAIEDLNSLKGGTLIIGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPSDLEN
LLQVIPYATDELALVLPTKHPLANKRELMKEDLYKLNFVTLDSQSTTRKVVDKLLKDSGLDIQRLKIEMELNSLEAIKNA
VQSGLGVSFLPVVSIERELAGGSIHKSYLADLEVKRELKLITNPSRYTSRASEAFKKNILPQFASSESPLRQINSI

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=31.6455696202532, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=30.7167235494881, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=26.9896193771626, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1790399, Length=303, Percent_Identity=27.0627062706271, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787879, Length=251, Percent_Identity=33.0677290836653, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=29.0322580645161, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=28.4584980237154, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=27.6264591439689, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1789204, Length=307, Percent_Identity=26.0586319218241, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788887, Length=247, Percent_Identity=27.1255060728745, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788626, Length=253, Percent_Identity=30.0395256916996, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=25.085910652921, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788297, Length=259, Percent_Identity=25.8687258687259, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081904, Length=225, Percent_Identity=27.5555555555556, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082024, Length=274, Percent_Identity=27.3722627737226, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790208, Length=257, Percent_Identity=28.4046692607004, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789173, Length=310, Percent_Identity=27.4193548387097, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1786448, Length=260, Percent_Identity=29.2307692307692, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=255, Percent_Identity=26.2745098039216, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=212, Percent_Identity=25.4716981132075, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789492, Length=274, Percent_Identity=26.6423357664234, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=23.6947791164659, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790011, Length=281, Percent_Identity=22.7758007117438, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786401, Length=263, Percent_Identity=25.4752851711027, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787806, Length=251, Percent_Identity=21.1155378486056, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=27.0491803278689, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35205; Mature: 35074

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKA
CCCCCCHHHHHHHHHHHHHCCCHHHHHHEEEEECCHHHEEHHCCCCEEEEEEEECCCCEE
LLTEGGKLLLEYCERILNQCDEACKAIEDLNSLKGGTLIIGASQTTGTYLMPRMIGLFRQ
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPSDLENLLQVIPYATDELALVLPTK
HCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCC
HPLANKRELMKEDLYKLNFVTLDSQSTTRKVVDKLLKDSGLDIQRLKIEMELNSLEAIKN
CCCCHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHH
AVQSGLGVSFLPVVSIERELAGGSIHKSYLADLEVKRELKLITNPSRYTSRASEAFKKNI
HHHHCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHC
LPQFASSESPLRQINSI
CHHHCCCCCHHHHHCCC
>Mature Secondary Structure 
PELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKA
CCCCCHHHHHHHHHHHHHCCCHHHHHHEEEEECCHHHEEHHCCCCEEEEEEEECCCCEE
LLTEGGKLLLEYCERILNQCDEACKAIEDLNSLKGGTLIIGASQTTGTYLMPRMIGLFRQ
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPSDLENLLQVIPYATDELALVLPTK
HCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCC
HPLANKRELMKEDLYKLNFVTLDSQSTTRKVVDKLLKDSGLDIQRLKIEMELNSLEAIKN
CCCCHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHH
AVQSGLGVSFLPVVSIERELAGGSIHKSYLADLEVKRELKLITNPSRYTSRASEAFKKNI
HHHHCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHC
LPQFASSESPLRQINSI
CHHHCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]