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The map label for this gene is pds [H]

Identifier: 123965407

GI number: 123965407

Start: 157822

End: 159243

Strand: Reverse

Name: pds [H]

Synonym: P9515_01721

Alternate gene names: 123965407

Gene position: 159243-157822 (Counterclockwise)

Preceding gene: 123965410

Following gene: 123965406

Centisome position: 9.34

GC content: 35.72

Gene sequence:

>1422_bases
ATGCGTGTTGTAATTGCTGGTGCAGGTTTAGCGGGCTTATCCTGCGCAAAATACCTTGTTGATAATGGTCACATTCCCAT
AGTTTTAGAAGCCAGAGATGTGCTTGGTGGGAAAGTTGCTGCTTGGAAAGACGAAGATGGAGATTGGTATGAGACCGGTT
TACATATATTTTTCGGTGCTTATCCAAATATGCTTCAACTTTTCAAAGAACTAGATATAGAAGACAGACTACAGTGGAAG
AGCCACTCTATGATTTTTAATCAGCCTTCTGAGCCTGGTACTTACAGTAGATTCGATTTCCCGGACTTACCTGCACCTGC
GAATGGTGTAACAGCAATTTTAAGTAACAATGATATGCTCTCATGGAATGAAAAAATTTTATTTGGCTTAGGTTTAGTTC
CTGCGATGTTGAGAGGACAGAAATATCTTGATAAGTGTGATTCAAAATCATGGTCAGAATGGTTAAAAGAACACAATATT
CCTGAGAGAGTTAATGATGAAGTATTTATTGCTATGAGCAAAGCGCTCAATTTTATTGGACCTGATGAAATCTCATCAAC
AGTTTTATTGACAGCACTTAATAGATTTTTGCAAGAAAAAAACGGCTCAAAAATGGCTTTCCTTGATGGGGCTCCACCAG
AAAGGCTTTGTCAACCAATAGTTGATTACATAAAAGCAAGGGGGGGAGAGGTACATATGAATAGTCCTTTAAGAAAGATA
GACCTTAATCAAGACAGTACAGTAAAAAGTTTTACAATTGCTTCTCCAGATAAGGATGAAAAGAAAAAGGTTATTACAGC
AGATGCCTATGTTAGTGCAATGCCTGTAGATCTCTTTAAACTGATGATTCCGGATCAATGGAAAGGTATCAATGCTTTCT
CAAAACTTGATGGTTTAATTGGAGTACCGGTAATCAATATCCATTTATGGTTTGATAAAAAATTAACGGATATTGATCAC
CTTTTATTTAGTAGATCTCCTCTTCTGAGTGTTTATGCAGACATGAGTATCACTTGTAAGGAATATGAAGATCCCAATAG
ATCCATGCTTGAATTAGTTTTTGCTCCTGCGAAAGATTGGATTAACAGAAGTGATCAAGATATTGTAGACGCAACAATGG
AAGAACTTAAAAAATTATTCCCAACTCATTTTATTGGAGATGAAAAAACTCAACTAAGAAAATATAAAGTTGTAAAAACC
CCAAGATCTGTATATAAGGCAGTCCCTGGATGTCAAGAATTCAGACCTAGTCAAAGATCTCCGATAAAAAACTTTTTCTT
AGCGGGTGATTATACAATGCAAAAATATCTTGCATCTATGGAAGGAGCTGTTCTAAGTGGTAAATTATGCGCAGAAAGTA
TCAATAAAGAATATTCAAAAACTACCAATAATGTTTCTCAGGAATCATCTAAAATAAACTAA

Upstream 100 bases:

>100_bases
CATTTTTTCCATAATCTGAAAATAATCAACAAAAAAAACAATTATGTCTTAACTTTAGGATAGCTTCTTTGTAAGTGTTA
ATTTATTTTTTGATTTAATA

Downstream 100 bases:

>100_bases
AACCTCCATTTAATAACTCTTTTTGAAAAATTCATTATCTCAACTTAACAAAGCATATGAAATATGCCGAAAAGAAACTC
AACAATGGGCTAAAACTTTT

Product: phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPSEPGTYSRFDFPDLPAPANGVTAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDSKSWSEWLKEHNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDYIKARGGEVHMNSPLRKI
DLNQDSTVKSFTIASPDKDEKKKVITADAYVSAMPVDLFKLMIPDQWKGINAFSKLDGLIGVPVINIHLWFDKKLTDIDH
LLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSDQDIVDATMEELKKLFPTHFIGDEKTQLRKYKVVKT
PRSVYKAVPGCQEFRPSQRSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKTTNNVSQESSKIN

Sequences:

>Translated_473_residues
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPSEPGTYSRFDFPDLPAPANGVTAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDSKSWSEWLKEHNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDYIKARGGEVHMNSPLRKI
DLNQDSTVKSFTIASPDKDEKKKVITADAYVSAMPVDLFKLMIPDQWKGINAFSKLDGLIGVPVINIHLWFDKKLTDIDH
LLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSDQDIVDATMEELKKLFPTHFIGDEKTQLRKYKVVKT
PRSVYKAVPGCQEFRPSQRSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKTTNNVSQESSKIN
>Mature_473_residues
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPSEPGTYSRFDFPDLPAPANGVTAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDSKSWSEWLKEHNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDYIKARGGEVHMNSPLRKI
DLNQDSTVKSFTIASPDKDEKKKVITADAYVSAMPVDLFKLMIPDQWKGINAFSKLDGLIGVPVINIHLWFDKKLTDIDH
LLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSDQDIVDATMEELKKLFPTHFIGDEKTQLRKYKVVKT
PRSVYKAVPGCQEFRPSQRSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKTTNNVSQESSKIN

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: 1.3.99.-

Molecular weight: Translated: 53298; Mature: 53298

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHCCCCEEEEECCCCCHHHHCEEEEECC
YPNMLQLFKELDIEDRLQWKSHSMIFNQPSEPGTYSRFDFPDLPAPANGVTAILSNNDML
CHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEE
SWNEKILFGLGLVPAMLRGQKYLDKCDSKSWSEWLKEHNIPERVNDEVFIAMSKALNFIG
CCCCHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCC
PDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDYIKARGGEVHMNSPLRKI
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCEEE
DLNQDSTVKSFTIASPDKDEKKKVITADAYVSAMPVDLFKLMIPDQWKGINAFSKLDGLI
ECCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCC
GVPVINIHLWFDKKLTDIDHLLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDW
CCCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHCCHHH
INRSDQDIVDATMEELKKLFPTHFIGDEKTQLRKYKVVKTPRSVYKAVPGCQEFRPSQRS
CCCCCHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHCCCHHHHHHCCCHHHCCCCCCC
PIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKTTNNVSQESSKIN
CHHHEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHCCCCEEEEECCCCCHHHHCEEEEECC
YPNMLQLFKELDIEDRLQWKSHSMIFNQPSEPGTYSRFDFPDLPAPANGVTAILSNNDML
CHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEE
SWNEKILFGLGLVPAMLRGQKYLDKCDSKSWSEWLKEHNIPERVNDEVFIAMSKALNFIG
CCCCHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCC
PDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDYIKARGGEVHMNSPLRKI
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCEEE
DLNQDSTVKSFTIASPDKDEKKKVITADAYVSAMPVDLFKLMIPDQWKGINAFSKLDGLI
ECCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCC
GVPVINIHLWFDKKLTDIDHLLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDW
CCCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHCCHHH
INRSDQDIVDATMEELKKLFPTHFIGDEKTQLRKYKVVKTPRSVYKAVPGCQEFRPSQRS
CCCCCHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHCCCHHHHHHCCCHHHCCCCCCC
PIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKTTNNVSQESSKIN
CHHHEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]