Click here to switch to the map view.

The map label for this gene is pds [H]

Identifier: 123967698

GI number: 123967698

Start: 150251

End: 151651

Strand: Reverse

Name: pds [H]

Synonym: A9601_01611

Alternate gene names: 123967698

Gene position: 151651-150251 (Counterclockwise)

Preceding gene: 123967701

Following gene: 123967697

Centisome position: 9.08

GC content: 35.26

Gene sequence:

>1401_bases
ATGCGTGTTGTAATTGCTGGTGCAGGTTTAGCAGGTTTATCTTGTGCTAAATATTTAGTCGATAATGGACACATCCCTAT
CGTACTTGAAGCTAGAGATGTTTTAGGCGGTAAAGTTGCCGCATGGAAAGATGAAGATGGAGATTGGTATGAAACTGGGT
TACATATATTTTTTGGAGCCTACCCAAATATGTTGCAACTTTTTAAGGAACTGGATATTGAAGATAGACTCCAATGGAAA
AGTCATTCAATGATTTTTAATCAGCCATCAGAGCCCGGAACTTACAGCAGATTTGATTTTCCCGATATACCCGCGCCAGT
TAATGGTGTATCAGCAATACTAAGCAATAATGATATGCTTTCATGGAATGAAAAGATTCTTTTTGGGTTAGGTTTAGTGC
CTGCAATGTTGAGAGGACAAAAGTACTTAGATAAATGTGATACAAAATCATGGACAGATTGGCTAAAAGAGCACAATATA
CCGGAAAGAGTTAATGATGAAGTATTTATAGCGATGAGTAAAGCTCTTAATTTCATTGGACCGGATGAAATATCATCTAC
AGTTTTACTAACAGCATTAAACAGATTTCTACAAGAAAAAAATGGTTCTAAAATGGCATTTCTTGACGGAGCTCCTCCAG
AAAGACTATGTCAACCAATTGTTGATTATATTACTGCTCGTGGTGGTGAAGTTCACATGAATAGTCCATTAAGGGAAATC
AATCTTAATGAAGACAGCACTGTTAAAAGTTTTACTGTTGCCTCCTTAGATAAAAACGAAAAGAAAGAGCTAACGGCTGA
TGCTTATGTAAGTGCAATGCCTGTAGATCTCTTTAAATTAATGATCCCAAAACAATGGAAAGGGTTAGATGCTTTTTCAA
AATTAGATGGCTTAAATGGTGTGCCAGTCATTAATATCCATTTATGGTTTGACAAAAAATTAACAGATATTGATCATTTA
TTATTTAGCAGATCACCACTGCTCAGCGTTTATGCAGATATGAGTATTACCTGCAAAGAATATGAAGATCCAAATAGATC
AATGCTTGAGTTGGTTTTTGCACCAGCAAAAGATTGGATAAATAGGAGTGAGCAGGATATTGTTAATGCAACTATGGAGG
AACTTAAAAAATTATTCCCAACTCATTTCATGGGAGACGATAAAACAAACTTACGAAAATATAAAGTAGTCAAAACTCCA
AGATCTGTTTATAAAGCAGTTCCTGGATGCCAAGAGTTCAGACCTAGTCAAAAATCGCCTATTAAAAACTTCTTTTTAGC
AGGTGATTATACTATGCAAAAATATTTAGCATCAATGGAGGGTGCTGTTTTAAGTGGTAAATTATGCGCAGAATCAATTA
ATAAGGAGTACTCCAAAATTCCTCAAAATGTTTCTGCATGA

Upstream 100 bases:

>100_bases
TTTTTTCCATAATTTTAAGAAATAATCAACGAAAAAAACTATTATGTTCTAACTTTAATGTAGCTTATTAGTAAGTGTTA
ATTTATTTCTTGATTTAATA

Downstream 100 bases:

>100_bases
GATTTTCATCCCAGTAATTTAAAATTCATCTAAAACTTTTTGAAAAATTCAATTTCTCAACTAGATCAAGCATACGAGAT
ATGCCGAAAAGAAACCCAAA

Product: phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDTKSWTDWLKEHNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDYITARGGEVHMNSPLREI
NLNEDSTVKSFTVASLDKNEKKELTADAYVSAMPVDLFKLMIPKQWKGLDAFSKLDGLNGVPVINIHLWFDKKLTDIDHL
LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSEQDIVNATMEELKKLFPTHFMGDDKTNLRKYKVVKTP
RSVYKAVPGCQEFRPSQKSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKIPQNVSA

Sequences:

>Translated_466_residues
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDTKSWTDWLKEHNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDYITARGGEVHMNSPLREI
NLNEDSTVKSFTVASLDKNEKKELTADAYVSAMPVDLFKLMIPKQWKGLDAFSKLDGLNGVPVINIHLWFDKKLTDIDHL
LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSEQDIVNATMEELKKLFPTHFMGDDKTNLRKYKVVKTP
RSVYKAVPGCQEFRPSQKSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKIPQNVSA
>Mature_466_residues
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDTKSWTDWLKEHNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDYITARGGEVHMNSPLREI
NLNEDSTVKSFTVASLDKNEKKELTADAYVSAMPVDLFKLMIPKQWKGLDAFSKLDGLNGVPVINIHLWFDKKLTDIDHL
LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSEQDIVNATMEELKKLFPTHFMGDDKTNLRKYKVVKTP
RSVYKAVPGCQEFRPSQKSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKIPQNVSA

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: 1.3.99.-

Molecular weight: Translated: 52499; Mature: 52499

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHCCCCEEEEECCCCCHHHHCEEEEECC
YPNMLQLFKELDIEDRLQWKSHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDML
CHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEE
SWNEKILFGLGLVPAMLRGQKYLDKCDTKSWTDWLKEHNIPERVNDEVFIAMSKALNFIG
CCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCC
PDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDYITARGGEVHMNSPLREI
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
NLNEDSTVKSFTVASLDKNEKKELTADAYVSAMPVDLFKLMIPKQWKGLDAFSKLDGLNG
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
VPVINIHLWFDKKLTDIDHLLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHCCHHHH
NRSEQDIVNATMEELKKLFPTHFMGDDKTNLRKYKVVKTPRSVYKAVPGCQEFRPSQKSP
CCCHHHHHHHHHHHHHHHCCHHCCCCCCCCCEEEEEECCCHHHHHHCCCHHHCCCCCCCC
IKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKIPQNVSA
HHHEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHCCCCEEEEECCCCCHHHHCEEEEECC
YPNMLQLFKELDIEDRLQWKSHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDML
CHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEE
SWNEKILFGLGLVPAMLRGQKYLDKCDTKSWTDWLKEHNIPERVNDEVFIAMSKALNFIG
CCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCC
PDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDYITARGGEVHMNSPLREI
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
NLNEDSTVKSFTVASLDKNEKKELTADAYVSAMPVDLFKLMIPKQWKGLDAFSKLDGLNG
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
VPVINIHLWFDKKLTDIDHLLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHCCHHHH
NRSEQDIVNATMEELKKLFPTHFMGDDKTNLRKYKVVKTPRSVYKAVPGCQEFRPSQKSP
CCCHHHHHHHHHHHHHHHCCHHCCCCCCCCCEEEEEECCCHHHHHHCCCHHHCCCCCCCC
IKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKIPQNVSA
HHHEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]