Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 123967701

GI number: 123967701

Start: 152714

End: 153658

Strand: Reverse

Name: rbcR [H]

Synonym: A9601_01641

Alternate gene names: 123967701

Gene position: 153658-152714 (Counterclockwise)

Preceding gene: 123967707

Following gene: 123967698

Centisome position: 9.2

GC content: 35.77

Gene sequence:

>945_bases
ATGCCAGAATTACCATTTACACTCGACCAATTAAGAATATTAAAAGCTATAGCAGCGCAAGGAAGCTTTAAAAAAGCAGC
AGATCTCTTATATGTAACCCAACCTGCCGTAAGTTTACAAATACAAAATTTAGAAAAACAACTGGAAATCACAATTTTCG
ACAGAGGTGGTAGGAAGGCTCTATTGACTGAAGGAGGGAGACTATTACTTGAATATTGTGAACGAATTTTGAATCAATGC
GACGAAGCTTGCAAAGCTATTGAAGATTTAAATAGCTTAAAAGGTGGCACACTTGTCATTGGAGCGAGCCAAACAACGGG
TACCTATTTAATGCCGAGAATGATAGGACTGTTCAGACAAAAATACCCTGATGTATCTGTTCAACTTCAAGTTCATAGTA
CAAGAAGAACTGGTTGGAGTGTGGCCAATGGACAAATTGACTTAGCCATTATTGGCGGGCAATTACCTGGAGATTTGGAA
AATTTGCTACAAGTCATCCCATATGCCACTGATGAATTGGCATTAGTTTTACCATCTAAACATCCACTTTCGACCAAAAA
AGAGCTTCTAAAAGAAGACTTATACAAATTAAATTTTGTAACGTTAGACTCACAATCTACAACAAGAAAAGTTGTTGATA
AACTTCTTCAAGATTCTGGGCTTGATATTCAAAGATTAAAAATTGAGATGGAACTTAACTCTCTTGAAGCAATCAAGAAT
GCAGTTCAATCAGGTTTAGGAGCTTCCTTTTTGCCTGTGGTTTCCATTGAAAGAGAATTATCAGCTGGAACAATCCACAA
AGCATTCGTAGCTGACTTAGAAGTTAAAAGAGAACTTAAATTAATTACTAATCCGTCAAGATATACGTCAAGAGCATCAG
AAGTATTTAAAAAAAATATTCTGCCACAATTTGCTAGTTTAGAAAGCCCTTTAAGGCATATATAA

Upstream 100 bases:

>100_bases
GTTTTATGAGTCTCCATATATTTAAATTGTTCAAATAATTTTTGTTCTTAACAAGAATGCTCCTAAGCATTAGAATTATA
AGAAATTGTAGGCATAATAG

Downstream 100 bases:

>100_bases
TTTTTCAAAACTGAATTGCTTCTTTATTAATACCTACTCCTCCGTCTTCGGCTTGTCCATCGCCTTTTATTATAAATTTA
TTTTCATTTACATCAGTCTG

Product: putative Rubisco transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MPELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEGGRLLLEYCERILNQC
DEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLE
NLLQVIPYATDELALVLPSKHPLSTKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
AVQSGLGASFLPVVSIERELSAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNILPQFASLESPLRHI

Sequences:

>Translated_314_residues
MPELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEGGRLLLEYCERILNQC
DEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLE
NLLQVIPYATDELALVLPSKHPLSTKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
AVQSGLGASFLPVVSIERELSAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNILPQFASLESPLRHI
>Mature_313_residues
PELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEGGRLLLEYCERILNQCD
EACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLEN
LLQVIPYATDELALVLPSKHPLSTKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKNA
VQSGLGASFLPVVSIERELSAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNILPQFASLESPLRHI

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=31.6151202749141, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=30.8016877637131, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=25.9515570934256, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=26.1904761904762, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=29.0983606557377, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787879, Length=300, Percent_Identity=29.3333333333333, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=28.0632411067194, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87082132, Length=255, Percent_Identity=25.8823529411765, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789204, Length=268, Percent_Identity=26.1194029850746, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=24.0549828178694, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788626, Length=252, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788887, Length=248, Percent_Identity=27.4193548387097, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=25, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082024, Length=280, Percent_Identity=27.1428571428571, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789173, Length=310, Percent_Identity=28.3870967741935, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081904, Length=222, Percent_Identity=27.4774774774775, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790262, Length=255, Percent_Identity=26.2745098039216, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790208, Length=257, Percent_Identity=27.6264591439689, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787601, Length=122, Percent_Identity=31.1475409836066, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=24.0963855421687, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789492, Length=264, Percent_Identity=26.1363636363636, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790011, Length=304, Percent_Identity=23.0263157894737, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786448, Length=265, Percent_Identity=27.9245283018868, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787806, Length=251, Percent_Identity=21.1155378486056, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786401, Length=150, Percent_Identity=29.3333333333333, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34851; Mature: 34720

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKA
CCCCCCHHHHHHHHHHHHHCCCHHHHHHEEEEECCHHHHHHHCCCCEEEEEEEECCCCEE
LLTEGGRLLLEYCERILNQCDEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGLFRQ
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLENLLQVIPYATDELALVLPSK
HCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCC
HPLSTKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
CCCHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHH
AVQSGLGASFLPVVSIERELSAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNI
HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHC
LPQFASLESPLRHI
CHHHHHHHHHHHCC
>Mature Secondary Structure 
PELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKA
CCCCCHHHHHHHHHHHHHCCCHHHHHHEEEEECCHHHHHHHCCCCEEEEEEEECCCCEE
LLTEGGRLLLEYCERILNQCDEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGLFRQ
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLENLLQVIPYATDELALVLPSK
HCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCC
HPLSTKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
CCCHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHH
AVQSGLGASFLPVVSIERELSAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNI
HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHC
LPQFASLESPLRHI
CHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]