| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998819
Identifier: 121998819
GI number: 121998819
Start: 2243663
End: 2244199
Strand: Reverse
Name: 121998819
Synonym: Hhal_2040
Alternate gene names: NA
Gene position: 2244199-2243663 (Counterclockwise)
Preceding gene: 121998820
Following gene: 121998818
Centisome position: 83.79
GC content: 65.36
Gene sequence:
>537_bases ATGCACACGGGTGTCAAGCAGACCCTTGCCGGTGTGGCCCTGATCTCGGCTACGGCCTTCGCCGCCTCGGCCAGCGCCGA GACCTTCTTCTTCAAGTACGGCCACACACCGGTCTACACCGCCTTCGACTCCGATGCCGAGGACAGCGACATCTCCGCCA ACGGCTTCGACTTCGGCGTCCACCTCAACGACGAGTTCCGCATGGGCGTTTACTACGAGCGGCTGGATGGTGAAGGTGAC GCAAACGCCGATATTCGCGGGCTGACCGCCGAGTACGATCTGGTGGGCGGCGTCGGCTTTGCCACCAGCGTCGGCATGAT GTTCGGCCAGGCCGCCGCTGATGCCACGGCCACCGACGTCTACGGCCGCTTCGCCCTGGACACCGGCGACACCTCGGAGA TGTTTGCCAAGGTCGCCTACCGGGGGACCAACGCCGGCGGCTGGGACGATTTCGGCGAAGATGGCGCCGCTGCCGACGAT CTGCCCGACGACCTGGACGGCCTCTACCTGAATGTCGGCTTCGGCTTCGGCTTCTGA
Upstream 100 bases:
>100_bases GTGTCGGCTTCGGCGTCCACTTCTGACTGAGGATCCGATCCGCCAACGGACCCCGCTCCCGCAGGTGGGAGCAGCCCAGC GCAAACAGAGGAGGTTGACC
Downstream 100 bases:
>100_bases GCCGTCCGCGGTGGCTCCTTCGTCCCGGCGCTGATTACAGCGCGCTGACCCCGGTGCCCGCGGCCCCGGGCCGCCGGGCA CGGGGGTCCTTTCTGTCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MHTGVKQTLAGVALISATAFAASASAETFFFKYGHTPVYTAFDSDAEDSDISANGFDFGVHLNDEFRMGVYYERLDGEGD ANADIRGLTAEYDLVGGVGFATSVGMMFGQAAADATATDVYGRFALDTGDTSEMFAKVAYRGTNAGGWDDFGEDGAAADD LPDDLDGLYLNVGFGFGF
Sequences:
>Translated_178_residues MHTGVKQTLAGVALISATAFAASASAETFFFKYGHTPVYTAFDSDAEDSDISANGFDFGVHLNDEFRMGVYYERLDGEGD ANADIRGLTAEYDLVGGVGFATSVGMMFGQAAADATATDVYGRFALDTGDTSEMFAKVAYRGTNAGGWDDFGEDGAAADD LPDDLDGLYLNVGFGFGF >Mature_178_residues MHTGVKQTLAGVALISATAFAASASAETFFFKYGHTPVYTAFDSDAEDSDISANGFDFGVHLNDEFRMGVYYERLDGEGD ANADIRGLTAEYDLVGGVGFATSVGMMFGQAAADATATDVYGRFALDTGDTSEMFAKVAYRGTNAGGWDDFGEDGAAADD LPDDLDGLYLNVGFGFGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18714; Mature: 18714
Theoretical pI: Translated: 3.74; Mature: 3.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTGVKQTLAGVALISATAFAASASAETFFFKYGHTPVYTAFDSDAEDSDISANGFDFGV CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEE HLNDEFRMGVYYERLDGEGDANADIRGLTAEYDLVGGVGFATSVGMMFGQAAADATATDV EECCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHH YGRFALDTGDTSEMFAKVAYRGTNAGGWDDFGEDGAAADDLPDDLDGLYLNVGFGFGF CEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC >Mature Secondary Structure MHTGVKQTLAGVALISATAFAASASAETFFFKYGHTPVYTAFDSDAEDSDISANGFDFGV CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEE HLNDEFRMGVYYERLDGEGDANADIRGLTAEYDLVGGVGFATSVGMMFGQAAADATATDV EECCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHH YGRFALDTGDTSEMFAKVAYRGTNAGGWDDFGEDGAAADDLPDDLDGLYLNVGFGFGF CEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA